View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_high_39 (Length: 253)
Name: NF20029_high_39
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 53105003 - 53105246
Alignment:
| Q |
1 |
ttttacctcttggtcctttcggataagcccaagaatcaacctttgaaaaactgctggtaactgatatatgtggactaacttcaacctggtggttcaaact |
100 |
Q |
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| T |
53105003 |
ttttccctcttggtcctttcggataagcccaagaatcaacctttgaaaaactgctggtaactgatatatgtggactaacttcaacctggtggttcaaact |
53105102 |
T |
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| Q |
101 |
gctcttcctagccacgccatatgagctagtagataaattaagacatttagtcttaacatctgaagccactggatctgccactaaagaatttcccttcctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
53105103 |
gctcttcctagccacgccatatgagctagtagataaattaagacatttagtcttaacatctgaagccactggatctgccactaaacactttcccttcctg |
53105202 |
T |
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| Q |
201 |
ttatatctaataatatcctcctcaacattattgttcttctctct |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53105203 |
ttatatctaataatatcctcctcaacattattgttcttctctct |
53105246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 43917710 - 43917951
Alignment:
| Q |
1 |
ttttacctcttggtcctttcggataagcccaagaatcaacctttgaaaaactgctggtaactgatatatgtggactaacttcaacctggtggttcaaact |
100 |
Q |
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||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||| || ||||||| ||||| ||||||||||||||| |
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| T |
43917710 |
ttttacctcttggtccttttggacaagcccaagaatcaatctttgaaaaactgcttgtaactgatatctgcggactaaattcaatctggtggttcaaact |
43917809 |
T |
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| Q |
101 |
gctcttcctagccacgccatatgagctagtagataaattaagacatttagtcttaacatctgaagccactggatctgccactaaagaatttcccttcctg |
200 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| | ||||||||||| |
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| T |
43917810 |
gctcttcctagccactccatatgaggtagtagataaattaagacgtttagtcttaacgtctgacaccactggatctgccactaaacactttcccttcctc |
43917909 |
T |
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| Q |
201 |
ttatatctaataatatcctcctcaacattattgttcttctct |
242 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
43917910 |
ttatatctaattatatcctcttcaacattattgttcttctct |
43917951 |
T |
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