View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_high_40 (Length: 250)
Name: NF20029_high_40
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 46571018 - 46570784
Alignment:
| Q |
1 |
cacaaaattgtaccttgaagactaaacccaacagagatcccagtgccagtaatgtcttccannnnnnnnnnnn--------tgtgtgcaaggaggaataa |
92 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46571018 |
cacaaaattgtaccttgaagactaaacccaacagagatcccagtgccagtaatgtcttccaagagagagagagagagagagtgtgtgcaaggaggaataa |
46570919 |
T |
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| Q |
93 |
ttgtttattagtaaatttattatgcagaaagaaaaatatgaaggacagataatattaaaaggaaaatgccnnnnnnnngtcaaattaattgagggaatta |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||| |
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| T |
46570918 |
ttgtttattagtaaatttattatgcagaaagaaaaatatgaaggacagataatatgccaa--aaaa-----------agtcaaattaattgagggaatta |
46570832 |
T |
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| Q |
193 |
actagcatggattagatgagatcttatcttgcttaactaaagcctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46570831 |
actagcatggattagatgagatcttatcttgcttaactaaagcctatg |
46570784 |
T |
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