View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20029_high_42 (Length: 247)
Name: NF20029_high_42
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_high_42 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 38942931 - 38943138
Alignment:
| Q |
19 |
ataactctcattcctactaaattccttcaaccaatccattaacagttgcacttacaataaaagttccatcgtcaggtatatcagtcagctgagcaatggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38942931 |
ataactctcattcctactaaattccttcaaccaatccattaacagttgcacttacaataaaagttccatcgtcaggtatatcagtcagctgagcaatggt |
38943030 |
T |
|
| Q |
119 |
tttcttcgcacatacaattcgcaaatacacttcatcaaaagacgaccttacacggggaccaagtatgggaacagtcttggatgtctcaactccatcaaag |
218 |
Q |
| |
|
|||||| | ||||||| |||| || ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38943031 |
tttctttg--catacaa-tcgctaaaacacttcatcaaaagacgaacttacacggggagcaagtatgggaacagtcttggatgtctcaactccatcaaag |
38943127 |
T |
|
| Q |
219 |
cccacccagaa |
229 |
Q |
| |
|
||||||||||| |
|
|
| T |
38943128 |
cccacccagaa |
38943138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University