View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_high_44 (Length: 240)
Name: NF20029_high_44
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 19091202 - 19091417
Alignment:
| Q |
9 |
gtagcaaaggataaaatataactagggtggctcgaaaaggttctgagatctacacaagaaaacgccttgtgtgtaaaattacgtatgaccaatagtctat |
108 |
Q |
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| T |
19091202 |
gtagcaaaagataaaatataaccaggatgactcaaaaaggttctga--tctacacaagaaaacgccttgtgtgtaaaattacgtatgatcaatagtctat |
19091299 |
T |
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| Q |
109 |
agagaagcaatgcaagtcttgtaaaataaactttaaaaatggacacactcatatacaacaattgcggtaagcagtggaatcatttaggcatatttgcagc |
208 |
Q |
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| T |
19091300 |
agagaagcaatgcaagtcttgtaaaataaactttaaaaatggatacactcatatacaacaattgcggtaagcagtggaatcatttaggcatatttgcagc |
19091399 |
T |
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| Q |
209 |
cttgagttaagtattcta |
226 |
Q |
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| T |
19091400 |
cttgagttaagtattcta |
19091417 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 3584750 - 3584783
Alignment:
| Q |
91 |
gtatgaccaatagtctatagagaagcaatgcaag |
124 |
Q |
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| T |
3584750 |
gtatgaccaatagtctatagagaaccaatgcaag |
3584783 |
T |
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