View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_high_47 (Length: 237)
Name: NF20029_high_47
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37909334 - 37909116
Alignment:
| Q |
1 |
ataaaggattaattaaaattgcatctttaaccgaagtgaaattattgtcacacacat--gtaagaagtgtaagaaag-agtatagatctgaaaacccaaa |
97 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
37909334 |
ataaaggattaattaaaattccatctttaaccgaagtaaaattattgtcacacacatatgtaagaagtgtaagaaaggagtatagatctgaaaacccaaa |
37909235 |
T |
|
| Q |
98 |
tccccaactcactctgcatcatcagaagaacgaaactgcaagcaaagcaaagcaaaaccatgtctctcaatcttcgtcagaaacaaacaggtaattagta |
197 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37909234 |
tccc-aactcactctgcatcatcagaagaacgaaactgcaagcaaagcaaa-----accatgtctctcaatcttcgtcagaaacaaacaggtaagtagta |
37909141 |
T |
|
| Q |
198 |
attctcaattcccttaattccattt |
222 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
37909140 |
attctcaattcccttaattccattt |
37909116 |
T |
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