View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_high_7 (Length: 447)
Name: NF20029_high_7
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 213 - 431
Target Start/End: Complemental strand, 18110415 - 18110197
Alignment:
| Q |
213 |
agcactcattcctactatcttttcctctaaattttctttggtaaccaatttctctattgtttttggttctacttcctcttcacccttttgagccttttca |
312 |
Q |
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| T |
18110415 |
agcactcattcctactatcttttcctctaaattttctttggtaaccaatttctctattgtttttggttctacttcctcttcacccttttgagccttttca |
18110316 |
T |
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| Q |
313 |
tttgtttgtgttttggttctctctatagatgttggttttgactccaacacttgttgaccattttgaggcttttcatctatttgtgttttggctctctcta |
412 |
Q |
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| T |
18110315 |
tttgtttgtgctttggttctctctatagatgttggttttgactccaacacttgttgaccattttgaggcttttcatctatttgtgttttggctctctcta |
18110216 |
T |
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| Q |
413 |
ttgatgttggtcttgtttc |
431 |
Q |
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| T |
18110215 |
ttgatgttggtcttgtttc |
18110197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 18110627 - 18110477
Alignment:
| Q |
1 |
gcagcaaattttctgattccattctttccttcttgatttggaggaattctgcagcaagattccttttccttctctggaacatttggagcagaaggttctg |
100 |
Q |
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| T |
18110627 |
gcagcaaattttctgattccattctttccttcttgattgggaggaattctgcagcaagattccttttccttctctggaacatttggagcagaaggttctg |
18110528 |
T |
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| Q |
101 |
ctttttcaacttccttttcttctaagttttgattcttgcttgactcataag |
151 |
Q |
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| T |
18110527 |
ctttttcaacttccttttcttctaagttttgattcttgcttgactcataag |
18110477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 395
Target Start/End: Complemental strand, 18110255 - 18110158
Alignment:
| Q |
298 |
ttttgagccttttcatttgtttgtgttttggttctctctatagatgttggttttgactccaacacttgttgaccattttgaggcttttcatctatttg |
395 |
Q |
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| T |
18110255 |
ttttgaggcttttcatctatttgtgttttggctctctctattgatgttggtcttgtttcaaattcttcttgacccttttgagacttttcatctatttg |
18110158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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