View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20029_low_10 (Length: 418)

Name: NF20029_low_10
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20029_low_10
NF20029_low_10
[»] chr5 (10 HSPs)
chr5 (12-306)||(1162809-1163109)
chr5 (311-403)||(1163145-1163234)
chr5 (156-305)||(40418993-40419134)
chr5 (42-138)||(40412251-40412347)
chr5 (329-403)||(40418876-40418950)
chr5 (92-151)||(39400652-39400711)
chr5 (329-397)||(39880427-39880495)
chr5 (42-131)||(40419145-40419234)
chr5 (329-386)||(3300086-3300147)
chr5 (329-386)||(3392979-3393040)
[»] chr4 (2 HSPs)
chr4 (151-305)||(25911483-25911629)
chr4 (329-403)||(25911695-25911769)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 1162809 - 1163109
Alignment:
Q  12 tatactttaatctatttatgtagagttgaaaatctcctaataa------agatggtttgccagtttttcttggtacgataggtattagattaatcaaaac 105  Q
    |||||||||||||||||||||||||||||||||||||||||||      |||| ||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  1162809 tatactttaatctatttatgtagagttgaaaatctcctaataattataaagatagtttgccagttttgcttcgtatgataggtattagattaatcaaaac 1162908  T
Q  106 tcaagtataaatggagtgaactatttgtttataacaaacaatataataaaaacagatccacaaaatatttacatccatccagcaccggaatgaatccata 205  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||    
T  1162909 tcaagtacaaatggagtgaactatttgtttataacaaacaatataataaaaacagatccacaaaatatttacatccatccagcacatgaacgaatccata 1163008  T
Q  206 taaaaggtagtactataccacaaacaaacaactgtttaagatttacgaaacagatatatacatagcagagaagatcaaaccaatgcatattagctgctta 305  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1163009 taaaaggtagtactataccacaaacaaacaactgtttaaaatttacgaaacagatatttacatagcagagaagatcaaaccaatgcatattagctgctta 1163108  T
Q  306 c 306  Q
    |    
T  1163109 c 1163109  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 403
Target Start/End: Original strand, 1163145 - 1163234
Alignment:
Q  311 ggaagacaggaaagtagtaaatggtgaaaggaactttatatgccaaatataatgacaggcatggtttcggaagcacgataaacacacataact 403  Q
    ||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||    
T  1163145 ggaagacaggaaagta---aatggtgaaaggaactttatatgccgaatataatgacaggcatggtttgggaagcacgatcaacacacataact 1163234  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 305
Target Start/End: Complemental strand, 40419134 - 40418993
Alignment:
Q  156 aacagatccacaaaatatttacatccatccagcaccggaatgaatccatataaaaggtagtactataccacaaacaaacaactgtttaagatttacgaaa 255  Q
    ||||||||||||||||||||    | || |||||| ||||| |||| |||||||||||| ||| ||||     ||||| ||||||| |||||||| ||||    
T  40419134 aacagatccacaaaatattt----caattcagcacaggaattaatcaatataaaaggtaatacgatac----tacaaataactgttaaagatttatgaaa 40419043  T
Q  256 cagatatatacatagcagagaagatcaaaccaatgcatattagctgctta 305  Q
    ||||||| ||| |||||||||||||| |||||||||||||||||||||||    
T  40419042 cagatatttacgtagcagagaagatcgaaccaatgcatattagctgctta 40418993  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 40412347 - 40412251
Alignment:
Q  42 aatctcctaataaagatggtttgccagtttttcttggtacgataggtattagattaatcaaaactcaagtataaatggagtgaactatttgtttata 138  Q
    ||||||||||||||||||||||||||||||| |||  |||||||  || ||||||||||| |||||||| | |||| ||||||||||||| ||||||    
T  40412347 aatctcctaataaagatggtttgccagttttgcttcttacgatacttagtagattaatcagaactcaagaacaaatagagtgaactatttatttata 40412251  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 40418950 - 40418876
Alignment:
Q  329 aaatggtgaaaggaactttatatgccaaatataatgacaggcatggtttcggaagcacgataaacacacataact 403  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||  |||||||||| ||||||| |||||    
T  40418950 aaatggtgaaaggaactttttatgccgaatataatgacaggcatggtttgtgaagcacgatcaacacacgtaact 40418876  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 39400711 - 39400652
Alignment:
Q  92 agattaatcaaaactcaagtataaatggagtgaactatttgtttataacaaacaatataa 151  Q
    |||||||||||| |||||||| |||| |||||||| |||| |||||||||||||||||||    
T  39400711 agattaatcaaagctcaagtagaaatagagtgaaccatttatttataacaaacaatataa 39400652  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 397
Target Start/End: Complemental strand, 39880495 - 39880427
Alignment:
Q  329 aaatggtgaaaggaactttatatgccaaatataatgacaggcatggtttcggaagcacgataaacacac 397  Q
    |||||||||||| |||||| |||||| |||||| |||||| |||| ||| ||||||| ||| |||||||    
T  39880495 aaatggtgaaagtaactttttatgccgaatatattgacagacatgttttgggaagcaagatcaacacac 39880427  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 40419234 - 40419145
Alignment:
Q  42 aatctcctaataaagatggtttgccagtttttcttggtacgataggtattagattaatcaaaactcaagtataaatggagtgaactattt 131  Q
    |||||||||||||||||||||||| |||||| |||  ||   || ||| ||||||||||||| |||||||  |||  |||| ||||||||    
T  40419234 aatctcctaataaagatggtttgctagttttacttcttagtgtatgtaatagattaatcaaagctcaagtccaaaaagagtaaactattt 40419145  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 3300147 - 3300086
Alignment:
Q  329 aaatggtgaaaggaactttatatgccaaata----taatgacaggcatggtttcggaagcac 386  Q
    ||||||||||||| |||||||||||| ||||    |||||||| ||||||||| ||||||||    
T  3300147 aaatggtgaaaggtactttatatgccgaatataattaatgacatgcatggtttgggaagcac 3300086  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 3393040 - 3392979
Alignment:
Q  329 aaatggtgaaaggaactttatatgccaaata----taatgacaggcatggtttcggaagcac 386  Q
    ||||||||||||| |||||||||||| ||||    |||||||| ||||||||| ||||||||    
T  3393040 aaatggtgaaaggtactttatatgccgaatataattaatgacatgcatggtttgggaagcac 3392979  T

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Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 151 - 305
Target Start/End: Original strand, 25911483 - 25911629
Alignment:
Q  151 ataaaaacagatccacaaaatatttacatccatccagcaccggaatgaatccatataaaaggtagtactataccacaaacaaacaactgtttaagattta 250  Q
    |||| ||||||||| ||||||||||    | ||||||||| ||||||||||||||||||||||| ||| ||||     ||||||||||||| ||||||||    
T  25911483 ataataacagatccccaaaatattt----caatccagcacaggaatgaatccatataaaaggtaatacgatac----tacaaacaactgttaaagattta 25911574  T
Q  251 cgaaacagatatatacatagcagagaagatcaaaccaatgcatattagctgctta 305  Q
     ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  25911575 tgaaacagatatttacatagcagagaagatcaaaccaatgtatattagctgctta 25911629  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 329 - 403
Target Start/End: Original strand, 25911695 - 25911769
Alignment:
Q  329 aaatggtgaaaggaactttatatgccaaatataatgacaggcatggtttcggaagcacgataaacacacataact 403  Q
    |||| |||||||||| ||| |||||| ||||||||||||| |||||||| ||||||| ||| ||||||| |||||    
T  25911695 aaatagtgaaaggaattttttatgccgaatataatgacagacatggtttgggaagcatgatcaacacacgtaact 25911769  T

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