View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20029_low_11 (Length: 414)
Name: NF20029_low_11
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_low_11 |
 | |
|
| [»] chr3 (32 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0274 (2 HSPs) |
| |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0648 (1 HSPs) |
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| [»] scaffold0640 (1 HSPs) |
| | |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 32)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 3 - 414
Target Start/End: Complemental strand, 19415993 - 19415579
Alignment:
| Q |
3 |
ccatttcatgactttgtttggaacattatatccacaatcttctgtcacagccataatcattaatcacctgataaatatgaagcaaatgcaatggatataa |
102 |
Q |
| |
|
|||||| |||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19415993 |
ccatttgatgactttgtttggaaaattatatacacgatcttctgtcacagccataatcattaatcacctgataattatgaagcaaatgcaatggatataa |
19415894 |
T |
|
| Q |
103 |
gttaaatggaattatataatnnnnnnnnn---taatctatgaaatgatcaataaaacttatcatctgttcagttatgaataacaaaatactctatagtct |
199 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19415893 |
gttaaatggaattatataataaaaaaaaaaaataatctatgaaatgatcaataaaacttatcatctgttcagttatgaataacaaaatactctatagtct |
19415794 |
T |
|
| Q |
200 |
aatcaatgaaattgtgaggtaggttaaactaaccttaactaatagcagctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagatt |
299 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19415793 |
aatcaatgaaattgtgaggtaggtttaactaaccttaactaactgcagctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagatt |
19415694 |
T |
|
| Q |
300 |
gccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccact |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19415693 |
gccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccact |
19415594 |
T |
|
| Q |
400 |
cccattcctagatac |
414 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
19415593 |
cccattcctagatac |
19415579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 63 - 404
Target Start/End: Complemental strand, 17943701 - 17943359
Alignment:
| Q |
63 |
taatcacctgataaatatgaagcaaatgcaatggatataagttaaatggaattatataatnnnnnnnnn-taatctatgaaatgatcaataaaacttatc |
161 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17943701 |
taatcacctgataaatatgaggcaaatgcaatggatataagttaaatggaattatataataaaacaaaaataatctatgaaatgatcaataaaacttatc |
17943602 |
T |
|
| Q |
162 |
atctgttcagttatgaataacaaaatactctatagtctaatcaatgaaattgtgaggtaggttaaactaaccttaactaatagcagctcagtttctgcga |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17943601 |
atctgttcagttatgaataacaaaatactctatagtctaatcaatgtaactgtgaaataggtttaactaaccttaactaacagcagctcagtttctgcga |
17943502 |
T |
|
| Q |
262 |
aagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatag |
361 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||| || ||||||||||||||||||| ||| |||||||||| ||||||||||||| ||| | || |
|
|
| T |
17943501 |
aagctatttaactttacgatcaaagtaacatagagtttgtcgcccactctatcaataaaccgaaagcatgcatgcctccattttctaataaaaaacaaag |
17943402 |
T |
|
| Q |
362 |
aaccacaaatcccccagaaacctactgcaaatcccactcccat |
404 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| || ||||| |
|
|
| T |
17943401 |
aaccacaaatcccccaaaaacctgctgcaaatccaacccccat |
17943359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 184 - 414
Target Start/End: Complemental strand, 18148443 - 18148213
Alignment:
| Q |
184 |
aaatactctatagtctaatcaatgaaattgtgaggtaggttaaactaaccttaactaatagcagctcagtttctgcgaaagctatttaactttacgacca |
283 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||| || ||||||| ||| ||||||||||||||||||||||| || |
|
|
| T |
18148443 |
aaatactctgtagtctaatcaatgaaactgtgaggtaggtttaactaaccttaactagcaggagctcagcttcggcgaaagctatttaactttacgatca |
18148344 |
T |
|
| Q |
284 |
aagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccacaaatcccccagaaacc |
383 |
Q |
| |
|
|||||||||||||| | | |||||||||||| ||||| ||||| |||||||| ||||| ||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
18148343 |
cagtaacatagagatagtcacccactctatcaactaaccgaaagtacgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacc |
18148244 |
T |
|
| Q |
384 |
tactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |
|
|
| T |
18148243 |
tactgcaaatcccactcccatgcctaaatac |
18148213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 174 - 414
Target Start/End: Complemental strand, 19462815 - 19462575
Alignment:
| Q |
174 |
atgaataacaaaatactctatagtctaatcaatgaaattgtgaggtaggttaaactaaccttaactaatagcagctcagtttctgcgaaagctatttaac |
273 |
Q |
| |
|
|||||| | |||||||||| |||| |||||||||||| | ||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
19462815 |
atgaatgataaaatactctgtagtttaatcaatgaaactatgaggtaggtttaactaaccttaactagcaggagctcagtttctgcgaaagctatttaac |
19462716 |
T |
|
| Q |
274 |
tttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccacaaatcc |
373 |
Q |
| |
|
|||||| |||||||||||||||| | | |||||||||||| ||||| ||||| |||||||| ||||| | ||||||||| | |||||||||||| | |
|
|
| T |
19462715 |
tttacggtcaaagtaacatagagaaagtcacccactctatcaactaaccgaaagtacgcatgcctccatttccgaataagaaacaaagaaccacaaatgc |
19462616 |
T |
|
| Q |
374 |
cccagaaacctactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
19462615 |
cccagaaacctactgcaaatcccactcccatgcctaaatac |
19462575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 184 - 414
Target Start/End: Complemental strand, 18105121 - 18104891
Alignment:
| Q |
184 |
aaatactctatagtctaatcaatgaaattgtgaggtaggttaaactaaccttaactaatagcagctcagtttctgcgaaagctatttaactttacgacca |
283 |
Q |
| |
|
||||||||| ||||| |||||| |||| ||||||||| | ||||||||||||||| || ||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
18105121 |
aaatactctgtagtcaaatcaacgaaaatgtgaggtaaaattaactaaccttaactagcaggagctcagtttcggcgaaagctatttaactttacgatca |
18105022 |
T |
|
| Q |
284 |
aagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccacaaatcccccagaaacc |
383 |
Q |
| |
|
||||||||||||||| | | ||||||||| || ||||| |||||||||||||| ||||| ||||||||||| |||||||| |||||||| |||| || |
|
|
| T |
18105021 |
aagtaacatagagatagtcacccactctattaactaaccgaaagtatgcatgcctccatttcctaataagaaacatagaaccgaaaatccccaagaatcc |
18104922 |
T |
|
| Q |
384 |
tactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |
|
|
| T |
18104921 |
tactgcaaatcccactcccatgcctaaatac |
18104891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 248 - 414
Target Start/End: Complemental strand, 18117517 - 18117351
Alignment:
| Q |
248 |
ctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttct |
347 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||| | | |||||||||||| ||||| ||||| |||||||| ||||| || |
|
|
| T |
18117517 |
ctcagtttcagcgaaagctatttaactttacgatcaaagtaacatagagatagtcacccactctatcaactaaccgaaagtacgcatgcctccatttcct |
18117418 |
T |
|
| Q |
348 |
aataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18117417 |
aataagaaacatagaaccacaaatcccccagaaacctactgcaaatcccactcccatgcctagatac |
18117351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 248 - 410
Target Start/End: Complemental strand, 18166717 - 18166555
Alignment:
| Q |
248 |
ctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttct |
347 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||| ||| | | ||||||||||||||||| ||||||||||| || |||||||| |
|
|
| T |
18166717 |
ctcagtttctgagaaagctatttaactttacgttcaaagtaacatagagcttgtcaccaactctatcaataaaccgaaagtatgcatgtctccattttct |
18166618 |
T |
|
| Q |
348 |
aataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccattcctag |
410 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
18166617 |
aataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatgcctag |
18166555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 185 - 414
Target Start/End: Original strand, 17725914 - 17726142
Alignment:
| Q |
185 |
aatactctatagtctaatcaatgaaattgtgaggtaggttaaactaaccttaactaatagcagctcagtttctgc-gaaagctatttaactttacgacca |
283 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||| ||| ||||||||||||||| | | ||| ||||||| |||||||||||||||||| | | |
|
|
| T |
17725914 |
aatactctatagtcagatcaat--aatactgaggtatgtttcactaaccttaactaacaagaactctatttctgcaaaaagctatttaactttacaatta |
17726011 |
T |
|
| Q |
284 |
aagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccacaaatcccccagaaacc |
383 |
Q |
| |
|
||||||||||||| ||| | | |||| ||||||||||| |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
17726012 |
aagtaacatagagcttgtcacctactccatcaataaaccaaaagtatgcatgcctccattttctaataagaaacaaagaaccacaaatcccccagaaacc |
17726111 |
T |
|
| Q |
384 |
tactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| |
|
|
| T |
17726112 |
tactgcaaatccaactcccatccctagatac |
17726142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 185 - 414
Target Start/End: Original strand, 19027143 - 19027371
Alignment:
| Q |
185 |
aatactctatagtctaatcaatgaaattgtgaggtaggttaaactaaccttaactaatagcagctcagtttctgc-gaaagctatttaactttacgacca |
283 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||| ||| ||||||||||||||| | | ||| ||||||| |||||||||||||||||| | | |
|
|
| T |
19027143 |
aatactctatagtcagatcaat--aatactgaggtatgtttcactaaccttaactaacaagaactctatttctgcaaaaagctatttaactttacaatta |
19027240 |
T |
|
| Q |
284 |
aagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccacaaatcccccagaaacc |
383 |
Q |
| |
|
||||||||||||| ||| | | |||| ||||||||||| |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
19027241 |
aagtaacatagagcttgtcacctactccatcaataaaccaaaagtatgcatgcctccattttctaataagaaacaaagaaccacaaatcccccagaaacc |
19027340 |
T |
|
| Q |
384 |
tactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| |
|
|
| T |
19027341 |
tactgcaaatccaactcccatccctagatac |
19027371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 218 - 414
Target Start/End: Complemental strand, 19382484 - 19382288
Alignment:
| Q |
218 |
gtaggttaaactaaccttaactaatagcagctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaat |
317 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| |||||||||| ||| | | |||| || || |
|
|
| T |
19382484 |
gtaggtttcactaaccttaactggcagcagctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatagat |
19382385 |
T |
|
| Q |
318 |
aaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||||| | |||||||||||||||||| ||||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
19382384 |
aaaccgaaagtatgcatgcctccatttcctaataagaaataaagaaccacaaatcccccaaaaacctactccaaatccaactcccatgcctagatac |
19382288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 184 - 414
Target Start/End: Complemental strand, 19377244 - 19377014
Alignment:
| Q |
184 |
aaatactctatagtctaatcaatgaaattgtgaggtaggttaaactaaccttaactaatagcagctcagtttctgcgaaagctatttaactttacgacca |
283 |
Q |
| |
|
||||||| |||| || |||||| ||| |||| |||||||| ||| ||||||||| || |||| | ||||| |||| || ||||||||||||| || |
|
|
| T |
19377244 |
aaatactttataatcagatcaataaaactgtgttgtaggttacactgaccttaactggcaggagcttaatttctttgaaacctgtttaactttacgatca |
19377145 |
T |
|
| Q |
284 |
aagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccacaaatcccccagaaacc |
383 |
Q |
| |
|
||||||||||||| ||| | | ||||||| ||||||| | |||||||||||||| ||||| ||||||||||| | |||||| ||||||||||||||||| |
|
|
| T |
19377144 |
aagtaacatagagtttgtcacctactctattaataaactgaaagtatgcatgcctccatttcctaataagaaacaaagaaccgcaaatcccccagaaacc |
19377045 |
T |
|
| Q |
384 |
tactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| |
|
|
| T |
19377044 |
tactgcaaatccaactcccatgcctagatac |
19377014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 218 - 402
Target Start/End: Complemental strand, 19465943 - 19465759
Alignment:
| Q |
218 |
gtaggttaaactaaccttaactaatagcagctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaat |
317 |
Q |
| |
|
||||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||| ||||||||||||||| ||| | | | || || || |
|
|
| T |
19465943 |
gtaggtttcactaaccttaactggtaggagctcaatttctgcgaaagctatttaactttaccgtcaaagtaacatagagcttgtcacctattccatatat |
19465844 |
T |
|
| Q |
318 |
aaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactccc |
402 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||||| | ||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
19465843 |
aaaccgaaagtatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactccc |
19465759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 248 - 414
Target Start/End: Complemental strand, 19438507 - 19438341
Alignment:
| Q |
248 |
ctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttct |
347 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| | |||||||||||| |||| | | |||| |||||| ||||| ||||| |||||||| ||||| || |
|
|
| T |
19438507 |
ctcaggttcagcgaaagctatttaactttactatcaaagtaacataaagatagtcacacactgtatcaactaaccgaaagtacgcatgcctccatttcct |
19438408 |
T |
|
| Q |
348 |
aataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
19438407 |
aataagaaacatagaaccacaaatcccccaaaaacctactgcaaatccaactcccatgcctagatac |
19438341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 246 - 414
Target Start/End: Original strand, 18872315 - 18872483
Alignment:
| Q |
246 |
agctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcatttt |
345 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| | ||||||||||||||| ||| | | |||| || ||||||| |||||||||||||| ||||| |
|
|
| T |
18872315 |
agctcaatatctgcgaaagctatttaactttatcatcaaagtaacatagagcttgtcacctactccatatataaaccaaaagtatgcatgcctccatttc |
18872414 |
T |
|
| Q |
346 |
ctaataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| || |||||| |
|
|
| T |
18872415 |
ctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatgccaagatac |
18872483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 184 - 414
Target Start/End: Complemental strand, 19355342 - 19355110
Alignment:
| Q |
184 |
aaatactctatagtctaatcaatgaaattgtgaggtaggttaaactaaccttaactaatagcag---ctcagtttctgcgaaagctatttaactttacga |
280 |
Q |
| |
|
||||||| ||||||| |||||| ||| | ||| ||||||| |||||||||||| |||||||| |||| ||||| ||| | ||||||||||||| |
|
|
| T |
19355342 |
aaatactttatagtcagatcaataaaactatgaagtaggttccactaaccttaac-aatagcaggagctcaatttcttttaaacccgtttaactttacga |
19355244 |
T |
|
| Q |
281 |
ccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccacaaatcccccagaa |
380 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||| |||||| |||||||||||||| ||||||||||| ||||| | ||||| |||||||||||||| |
|
|
| T |
19355243 |
tcaaagtaacatagatcttgtcacgcactctatcaacaaaccgaaagtatgcatgcctccattttctaattagaaacaaagaacggcaaatcccccagaa |
19355144 |
T |
|
| Q |
381 |
acctactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| |
|
|
| T |
19355143 |
acctactgcaaatccaactcccatgcctagatac |
19355110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 212 - 414
Target Start/End: Original strand, 14894793 - 14894995
Alignment:
| Q |
212 |
tgtgaggtaggttaaactaaccttaactaatagcagctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactct |
311 |
Q |
| |
|
||||| |||||||| |||||||||||||| | |||||| ||| | | |||| | ||||||||| || ||||||||||||||| ||| | | |||| |
|
|
| T |
14894793 |
tgtgaagtaggttacactaaccttaactagccggagctcaattttttccaaagttgtttaactttgggatcaaagtaacatagagcttgtcacctactcc |
14894892 |
T |
|
| Q |
312 |
atcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccattcctaga |
411 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||| | ||||||| |||||||||| ||||||||||||||||| | |||||| || ||| |
|
|
| T |
14894893 |
atcaataaaccgaaagtatgcatgcctccattttctaataagaaacaaagaaccagaaatcccccaaaaacctactgcaaatccaattcccatgccaaga |
14894992 |
T |
|
| Q |
412 |
tac |
414 |
Q |
| |
|
||| |
|
|
| T |
14894993 |
tac |
14894995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 248 - 414
Target Start/End: Complemental strand, 19394710 - 19394544
Alignment:
| Q |
248 |
ctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttct |
347 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| |||||||||| ||| | | |||| || |||| ||| ||| |||||||||| ||||| || |
|
|
| T |
19394710 |
ctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcct |
19394611 |
T |
|
| Q |
348 |
aataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
19394610 |
aataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatac |
19394544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 268 - 414
Target Start/End: Complemental strand, 19426231 - 19426085
Alignment:
| Q |
268 |
tttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccac |
367 |
Q |
| |
|
||||||||||||| |||||||||||||| || | ||||||||||| |||||| |||||||||||| | |||||||||||||| || | |||||||| |
|
|
| T |
19426231 |
tttaactttacgatcaaagtaacatagatcttatcacgcactctatcaacaaaccgaaagtatgcatgcttccattttctaataaggaacaaagaaccac |
19426132 |
T |
|
| Q |
368 |
aaatcccccagaaacctactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
19426131 |
aaatcccccagaaacctactgcaaatccaactcccatccctagatac |
19426085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 253 - 414
Target Start/End: Complemental strand, 25464609 - 25464448
Alignment:
| Q |
253 |
tttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataa |
352 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||| ||| | ||||| || ||||||||| |||||||||||||| ||||| ||||||| |
|
|
| T |
25464609 |
tttctgcgaaagtggtttaactttacgatcaaagtaacatagagtttgtcactcactccattaataaaccgaaagtatgcatgcctccatttcctaataa |
25464510 |
T |
|
| Q |
353 |
gaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
||| | |||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
25464509 |
aaaacaaagaaccacaaatcccccagaaacctattgcaaatccaactcccaagcctagatac |
25464448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 271 - 414
Target Start/End: Complemental strand, 19335550 - 19335407
Alignment:
| Q |
271 |
aactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccacaaa |
370 |
Q |
| |
|
|||||||||| |||||||||||||| ||| | ||||||||| || |||||| ||||| |||||||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
19335550 |
aactttacgatcaaagtaacatagatcttgtcacccactctataaacaaaccgaaagtaagcatgcctccattttctaataagaaacaaagaaccacaaa |
19335451 |
T |
|
| Q |
371 |
tcccccagaaacctactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
|||||||||||||| |||||||||| |||| ||| ||||||||| |
|
|
| T |
19335450 |
tcccccagaaacctgctgcaaatccaactctcatccctagatac |
19335407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 254 - 404
Target Start/End: Complemental strand, 17951378 - 17951228
Alignment:
| Q |
254 |
ttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataag |
353 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| |||||||| || |||||| || |||||||| |||||||||||||| ||||||| |||||| |
|
|
| T |
17951378 |
ttctgcaaaagctatttaactttaccttcaaagttacatagagcctgttacccactccatatataaaccgaaagtatgcatgcctccattttcgaataag |
17951279 |
T |
|
| Q |
354 |
aaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccat |
404 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17951278 |
aaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccat |
17951228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 254 - 414
Target Start/End: Complemental strand, 19352947 - 19352787
Alignment:
| Q |
254 |
ttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataag |
353 |
Q |
| |
|
|||| |||||||||||||||||||| | ||||| ||||| || || |||||| || |||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
19352947 |
ttctacgaaagctatttaactttaccattaaagttacataaagcctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaataag |
19352848 |
T |
|
| Q |
354 |
aaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
||| | ||||||||||||||||||||||||| |||||||||| |||||||| ||||||||| |
|
|
| T |
19352847 |
aaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatgcctagatac |
19352787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 260 - 404
Target Start/End: Complemental strand, 19401275 - 19401131
Alignment:
| Q |
260 |
gaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaat |
359 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||||| || |||||| || || ||||| || ||||||||||| ||||||||||| ||||| | |
|
|
| T |
19401275 |
gaaagctatttaactttaccatcaaagttacatagagcctgttacccactccatatatgaaccgaaaatatgcatgcctccattttctaatgagaaacaa |
19401176 |
T |
|
| Q |
360 |
agaaccacaaatcccccagaaacctactgcaaatcccactcccat |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19401175 |
agaaccacaaatcccccagaaacctactgcaaatcccactcccat |
19401131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 253 - 403
Target Start/End: Complemental strand, 19456852 - 19456702
Alignment:
| Q |
253 |
tttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataa |
352 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||| ||||||| || |||||| || |||| || |||||||||||||| ||||| ||||||| |
|
|
| T |
19456852 |
tttctgcgaaagctatttaactttaccatcaaagttacatagaccctgttacccactccatatataacccaaaagtatgcatgcctccatttcctaataa |
19456753 |
T |
|
| Q |
353 |
gaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactccca |
403 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19456752 |
gaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactccca |
19456702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 254 - 414
Target Start/End: Complemental strand, 18017577 - 18017417
Alignment:
| Q |
254 |
ttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataag |
353 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||| ||||| || || |||||| || |||||||| || ||||||||||| ||||||||||| || |
|
|
| T |
18017577 |
ttctacgaaagctatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgag |
18017478 |
T |
|
| Q |
354 |
aaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
||| | ||||||||||||||||||||||||| ||||||| || |||||||| ||||||||| |
|
|
| T |
18017477 |
aaacaaagaaccacaaatcccccagaaacctgctgcaaagccaactcccatgcctagatac |
18017417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 227 - 404
Target Start/End: Complemental strand, 18110012 - 18109835
Alignment:
| Q |
227 |
actaaccttaactaatagcagctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaa |
326 |
Q |
| |
|
||||||||| |||| || |||||| ||| || ||||||||| |||||||| | ||| || |||||||| || |||||| || ||||| || || |
|
|
| T |
18110012 |
actaacctttactagcagaagctcaacttcagcaaaagctattcaactttaccatcaatgttacatagagcctgttacccactccatatataaaacgaaa |
18109913 |
T |
|
| Q |
327 |
gtatgcatgcctgcattttctaataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccat |
404 |
Q |
| |
|
|||||||||||| ||||| || |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18109912 |
gtatgcatgcctccatttcctgataacaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccat |
18109835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 403
Target Start/End: Complemental strand, 16678789 - 16678613
Alignment:
| Q |
227 |
actaaccttaactaatagcagctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaa |
326 |
Q |
| |
|
||||||||| |||| ||| | |||| ||||| ||||| ||||||||||||| | |||||| ||||| || ||| || |||||| ||||||||| | | |
|
|
| T |
16678789 |
actaaccttcactattaggaactcaacttctgtgaaagttatttaactttaccatcaaagttacatacagcttgtcgcccactccatcaataaattgata |
16678690 |
T |
|
| Q |
327 |
gtatgcatgcctgcattttctaataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactccca |
403 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| | |||||||||||| |||||||||||||| ||||| || ||||||| |
|
|
| T |
16678689 |
gtatgtgtgcctccatttcctaataagaaacaaagaaccacaaataccccagaaacctaccgcaaaaccaactccca |
16678613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 404
Target Start/End: Original strand, 24493199 - 24493375
Alignment:
| Q |
226 |
aactaaccttaactaatagcagctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccgga |
325 |
Q |
| |
|
||||||||||||||| || | |||| |||||| ||||||||| ||||| || | |||||| ||||||| || | |||||| ||| ||||||||| |
|
|
| T |
24493199 |
aactaaccttaactagcaggaactcattttctgtgaaagctat--aacttcaccatcaaagttacatagatcctgtcacccactccatcgataaaccggt |
24493296 |
T |
|
| Q |
326 |
agtatgcatgcctgcattttctaataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccat |
404 |
Q |
| |
|
|||| || ||||| ||||| ||||||||||| | || |||||| ||| ||| ||||||||| |||| || |||||||| |
|
|
| T |
24493297 |
agtacgcgtgcctccatttcctaataagaaataaaggaccacacatcaaccaaaaacctactccaaacccaactcccat |
24493375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 230
Target Start/End: Complemental strand, 19438587 - 19438510
Alignment:
| Q |
153 |
aaacttatcatctgttcagttatgaataacaaaatactctatagtctaatcaatgaaattgtgaggtaggttaaacta |
230 |
Q |
| |
|
|||||| |||| |||| | |||||||| | ||||||||||| |||| ||||||||||| |||||| |||||| ||||| |
|
|
| T |
19438587 |
aaacttgtcatgtgttaaattatgaatcataaaatactctacagtcaaatcaatgaaactgtgagataggtttaacta |
19438510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 18105228 - 18105170
Alignment:
| Q |
63 |
taatcacctgataaa-tatgaagcaaatgcaatggatataa--gttaaatggaattata |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
18105228 |
taatcacctgataaaatatgaagcaaatgcaattgatataacttttaaatggaattata |
18105170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 16679056 - 16679012
Alignment:
| Q |
63 |
taatcacctgataaa-tatgaagcaaatgcaatggatataagtta |
106 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
16679056 |
taatcacctgagaaaatatgaagcaaatgaaatggatataagtta |
16679012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 18148550 - 18148510
Alignment:
| Q |
63 |
taatcacctgataaa-tatgaagcaaatgcaatggatataa |
102 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
18148550 |
taatcacctgataaaatatgaagcaaatgcaattgatataa |
18148510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 180 - 404
Target Start/End: Original strand, 13665317 - 13665543
Alignment:
| Q |
180 |
aacaaaatactctatagtctaatcaatgaaattgtgaggtaggtta--aactaaccttaactaatagcagctcagtttctgcgaaagctatttaacttta |
277 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||| ||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
13665317 |
aacaaaatattctatagtctaatcaatgaaactgtgaagtaggtttttaactaaccttaactaacagcagctcagttcctgcgaaagctatttaacttta |
13665416 |
T |
|
| Q |
278 |
cgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccacaaatccccca |
377 |
Q |
| |
|
| | |||||||| |||||||||| || |||||||||||| |||||| ||| |||||||||| ||||||||||||||||| | ||||||||| |||||||| |
|
|
| T |
13665417 |
ccatcaaagtaatatagagattgtcgcccactctatcaaaaaaccgaaagcatgcatgcctccattttctaataagaaacaaagaaccacatatccccca |
13665516 |
T |
|
| Q |
378 |
gaaacctactgcaaatcccactcccat |
404 |
Q |
| |
|
||||||| |||||||||| || ||||| |
|
|
| T |
13665517 |
gaaacctgctgcaaatccaacccccat |
13665543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 13665043 - 13665102
Alignment:
| Q |
63 |
taatcacctgataaatatgaagcaaatgcaatggatataagttaaatggaattatataat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13665043 |
taatcacctgataaatatgaagcaaatgcaatggatataagttaaatggaattatataat |
13665102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 201 - 414
Target Start/End: Complemental strand, 15537141 - 15536928
Alignment:
| Q |
201 |
atcaatgaaattgtgaggtaggttaaactaaccttaactaatagcagctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagattg |
300 |
Q |
| |
|
|||||||||| ||| | ||||||| ||| |||||||||| || |||||| |||||| |||| | ||||||||||||| |||||||||||||| ||| |
|
|
| T |
15537141 |
atcaatgaaactgttaagtaggttccactgaccttaactagcaggagctcaatttctgtgaaacatgtttaactttacgatcaaagtaacatagatcttg |
15537042 |
T |
|
| Q |
301 |
ccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactc |
400 |
Q |
| |
|
| | ||| ||||| ||||||| |||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
15537041 |
tcacctactttatcagtaaaccgaaagtatgcatgcctccattttctaataagaaacaaagaaccacaaatcccccagaaacctaccgcaaatccaactc |
15536942 |
T |
|
| Q |
401 |
ccattcctagatac |
414 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
15536941 |
ccatccctagatac |
15536928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 180 - 414
Target Start/End: Original strand, 2708946 - 2709178
Alignment:
| Q |
180 |
aacaaaatactctatagtctaatcaatgaaattgtgaggtaggttaaactaaccttaactaatagcagctcagtttctgcgaaagctatttaactttacg |
279 |
Q |
| |
|
||||||||| | |||||| | |||||| ||| ||||| ||||||| | |||||||||||| ||| ||||| ||||| ||||| | |||||||||| |
|
|
| T |
2708946 |
aacaaaatattgtatagtttgatcaat-aaactgtgaagtaggttca-ctaaccttaacttgtagaagctcgatttctatgaaagttgtttaactttatc |
2709043 |
T |
|
| Q |
280 |
accaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccacaaatcccccaga |
379 |
Q |
| |
|
| |||||| |||||||| ||| | | |||| |||||||||||| |||||| | ||| ||||| ||||||||||| | || ||||||||||||||| | |
|
|
| T |
2709044 |
atcaaagttacatagagcttgtcacctactccatcaataaaccgatagtatgtgttcctccatttcctaataagaaacaaaggaccacaaatcccccaaa |
2709143 |
T |
|
| Q |
380 |
aacctactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| |
|
|
| T |
2709144 |
aacctactgcaaatccaactcccatgcctagatac |
2709178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 268 - 414
Target Start/End: Complemental strand, 22127 - 21981
Alignment:
| Q |
268 |
tttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccac |
367 |
Q |
| |
|
||||||||||| | | ||||||||||||| ||| | ||||||||||||||||||| ||||||||||||| |||||| |||| ||||| | ||||||| |
|
|
| T |
22127 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccaa |
22028 |
T |
|
| Q |
368 |
aaatcccccagaaacctactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
|||||||||||||||| ||||||||||| || ||||| || |||||| |
|
|
| T |
22027 |
aaatcccccagaaaccaactgcaaatccaacccccatgccaagatac |
21981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 395
Target Start/End: Original strand, 2029 - 2156
Alignment:
| Q |
268 |
tttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccac |
367 |
Q |
| |
|
||||||||||| | | ||||||||||||| ||| | ||||||||||||||||||| ||||||||||||| |||||| |||| ||||| | |||||| |
|
|
| T |
2029 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
2128 |
T |
|
| Q |
368 |
aaatcccccagaaacctactgcaaatcc |
395 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
2129 |
aaatcccccagaaaccaactgcaaatcc |
2156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 246 - 414
Target Start/End: Complemental strand, 8461129 - 8460961
Alignment:
| Q |
246 |
agctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcatttt |
345 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||| | |||| | ||||||| ||| | ||| || ||||||||| || ||||||||||||| ||||| |
|
|
| T |
8461129 |
agctcaatttctgcgaaatctaattaactttaccatcaaaattccatagagcttgtcacccattccatcaataaatcgatagtatgcatgcctccatttc |
8461030 |
T |
|
| Q |
346 |
ctaataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
||||||||||| | |||||||||||||||||| ||||| ||||||||||| |||||||| || |||||| |
|
|
| T |
8461029 |
ctaataagaaacaaagaaccacaaatcccccaaaaacccactgcaaatccaactcccatgccaagatac |
8460961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 414
Target Start/End: Original strand, 2558 - 2705
Alignment:
| Q |
268 |
tttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccac |
367 |
Q |
| |
|
||||||||||| | | ||||||||||||| ||| | ||||||||||||||||||| ||||||||||||| |||||| |||| ||||| | ||||||| |
|
|
| T |
2558 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccaa |
2657 |
T |
|
| Q |
368 |
aaat-cccccagaaacctactgcaaatcccactcccattcctagatac |
414 |
Q |
| |
|
|||| |||||||||||| ||||||||||| || ||||| || |||||| |
|
|
| T |
2658 |
aaatacccccagaaaccaactgcaaatccaacccccatgccaagatac |
2705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 395
Target Start/End: Complemental strand, 6944 - 6817
Alignment:
| Q |
268 |
tttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccac |
367 |
Q |
| |
|
||||||||||| | | ||||||||||||| ||| | ||||||||||||||||||| ||||||||||||| |||||| |||| ||||| | |||||| |
|
|
| T |
6944 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
6845 |
T |
|
| Q |
368 |
aaatcccccagaaacctactgcaaatcc |
395 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
6844 |
aaatcccccagaaaccaactgcaaatcc |
6817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 395
Target Start/End: Complemental strand, 12042 - 11915
Alignment:
| Q |
268 |
tttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccac |
367 |
Q |
| |
|
||||||||||| | | ||||||||||||| ||| | ||||||||||||||||||| ||||||||||||| |||||| |||| ||||| | |||||| |
|
|
| T |
12042 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
11943 |
T |
|
| Q |
368 |
aaatcccccagaaacctactgcaaatcc |
395 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
11942 |
aaatcccccagaaaccaactgcaaatcc |
11915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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