View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_low_14 (Length: 391)
Name: NF20029_low_14
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 3152224 - 3152613
Alignment:
| Q |
1 |
cacccttgcaaaaagctccttcaccaaagtccttagagatgtatagtgttttttagtatcctcatccctacacctctgcagctgacggaacaaacatatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3152224 |
cacccttgcaaaaagctccttcaccaaagtccttagagatgtatagtgttttttagtatccacatccctacacctctgcagctgacggaacaaacatatg |
3152323 |
T |
|
| Q |
101 |
gaggtaccaagacaagaaaacaaataaaaacacacataataaacgagaggagtgtgagagtaattgaatttatttcattgac-----aactctatggagt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3152324 |
gaggtaccaagacaagaaaacaaataaaaacacacataataaacgagaggagtgtgagagtaattgaatttatttcattgacatgacaactctatggagt |
3152423 |
T |
|
| Q |
196 |
ttggttatgtttccatgattactactgaattaattaggctaagtcataccttattaatggtattgcggatgcacaattatgttagctctggagtctggaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3152424 |
ttggttatgtttccatgattactactgaattaattaggctaagtcataccttattaatggtattgcggatgcacaattatgttagctctggagtctggaa |
3152523 |
T |
|
| Q |
296 |
gcttgatactagtgatttcctataatttgtgaactttgtggaatatggttttgtttttcatgcttcttacttggtgtctacctttgctac |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3152524 |
gcttgatactagtgatttcctataatttgtgaactttgtggaatatggttttgtttttcatgcttcttacttggtgtctacctttgctac |
3152613 |
T |
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