View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20029_low_15 (Length: 376)
Name: NF20029_low_15
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_low_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 362
Target Start/End: Complemental strand, 29142704 - 29142360
Alignment:
| Q |
16 |
atcccttcctaagtttcttatttctagcactccgctcagacaagaaacggaataaataaattccggggaataatcacaaccaaaacaagccacagaaaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29142704 |
atcccttcctaagtttcttatttctagcactccgctcagacaagaaacggaataaataaattccggggaataatcacaaccaaaacaagccacagaaaga |
29142605 |
T |
|
| Q |
116 |
catcatatcaaacttgtgaggcgagattaaagattaaaaatatgtgaacatgagtttctatgttaccaacacaaaagacacaatgcttcgatgcatgcaa |
215 |
Q |
| |
|
||||||| |||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29142604 |
catcataccaaacttgtgagacgagatcacagattaaaaatatgtgaacatgagtttctatgttaccaacacaa--gacacaatgcttcgatgcatgcaa |
29142507 |
T |
|
| Q |
216 |
ataaattacacaagtatttctcataagaatcctattatgaagaagtttccatgagaaagcaagaactttgttggcgccaggcttttcgaaagactatgaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29142506 |
ataaattacacaagtatttctcataagaatcctattatgaagaattttccatgagaaagcaagaactttgttggcgccaggcttttcgaaagactatgaa |
29142407 |
T |
|
| Q |
316 |
acacactttgtctccaacgtcacaagataagtctcattcaacatctt |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29142406 |
acacactttgtctccaacgtcacaagataagtctcattcaacatctt |
29142360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University