View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20029_low_19 (Length: 341)
Name: NF20029_low_19
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 32643641 - 32643316
Alignment:
| Q |
1 |
acaagagcattgataacagtgccttgtagaactgttacttttgagacaaggttatggtacccaactttttcaagccaaagccagagagccatgactagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32643641 |
acaagagcattgataacagtgccttgtagaagtgttacttttgagacaaggttatggtacccaactttttcaagccaaagccagagagccatgactagaa |
32643542 |
T |
|
| Q |
101 |
gagattgagtcacctcgtggtgaagtttgaagatcaaaaaacaaaatagctcacgatcaatttggtaaaaaatgttaagctcatcagtggtgataggagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32643541 |
gagattgagtcacctcgtggtgaagtttgaagatcaaaaaacaaaatagctcacgatcaatttggtaaaaaaggttaagctcatcagtggtgataggagt |
32643442 |
T |
|
| Q |
201 |
ctgtgtgacgaacaaagacctatccatgatgatgacaggttaaagggacgttagaagaaagtgagatgtggcgagttgtggttttatattagtaaaatac |
300 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32643441 |
ctgtgtgacaaacaaaggcttatccatgatgatgacaggttaaagggacgttagaagaaagtgagatgtggcgagttatggttttatattagtaaaatac |
32643342 |
T |
|
| Q |
301 |
catatttatatatgcaacgctctctg |
326 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
32643341 |
catatttatatatacaacgctctctg |
32643316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University