View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_low_26 (Length: 312)
Name: NF20029_low_26
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 1348309 - 1348017
Alignment:
| Q |
16 |
gccaaaactataaattttaaacccttatccaagttgatcaaggccaaaatccatttatttgatattccgttcaaagcagtttataatgtcgagtttctaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1348309 |
gccaaaactataaattttaaacccttatccaagttgatcaaggccaaaatccatttatttgatattccgttcagagcagtttataatgtcgagtttctaa |
1348210 |
T |
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| Q |
116 |
cagtattagaggtatcatatttataatcaaaattatattat--gtgatgtgatgtttgaatttctattttttatgttattttgtgctgtgcagatgggga |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1348209 |
cagtattagaggtatcatatttataatcaaaattatattatatgtgatgtgatgtttgaatttctattttttatgttattttgtgctgtgcagatgggga |
1348110 |
T |
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| Q |
214 |
aatttgtttcttttgatttactcaattcatattacaaaggctttcccgtgtttgaaaacttaattcaacttcagctagtttggtttgatgatg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1348109 |
aatttgtttcttttgatttactcaattcatattacaaaggctttcccgtgtttgaaaacttaattcaacttcagctagtttggttttatgatg |
1348017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 13712326 - 13712285
Alignment:
| Q |
235 |
tcaattcatattacaaaggctttcccgtgtttgaaaacttaa |
276 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13712326 |
tcaattcatattacaaaggctttcctgtgtttgaaaacttaa |
13712285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 19806817 - 19806858
Alignment:
| Q |
235 |
tcaattcatattacaaaggctttcccgtgtttgaaaacttaa |
276 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
19806817 |
tcaatttatattacaaaggcttttccgtgtttgaaaacttaa |
19806858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 19969719 - 19969678
Alignment:
| Q |
235 |
tcaattcatattacaaaggctttcccgtgtttgaaaacttaa |
276 |
Q |
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|||||||||||||||||| |||||| ||||||| |||||||| |
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| T |
19969719 |
tcaattcatattacaaagactttccagtgtttggaaacttaa |
19969678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 17392236 - 17392284
Alignment:
| Q |
82 |
ccgttcaaagcagtttataatgtcgagtttctaacagtattagaggtat |
130 |
Q |
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|||||||||||||||||||||||| ||| |||||| |||| ||||||| |
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| T |
17392236 |
ccgttcaaagcagtttataatgtcaagtatctaactgtatgtgaggtat |
17392284 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 16258602 - 16258535
Alignment:
| Q |
235 |
tcaattcatattacaaaggctttcccgtgtttgaaaacttaattcaacttcagctagtttggtttgat |
302 |
Q |
| |
|
|||||||||||||| |||||| || |||||||||||||||||| |||||| ||| ||||||||||| |
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|
| T |
16258602 |
tcaattcatattaccaaggctgccctgtgtttgaaaacttaattgaacttcgactattttggtttgat |
16258535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 31114986 - 31115030
Alignment:
| Q |
33 |
taaacccttatccaagttgatcaaggccaaaatccatttatttga |
77 |
Q |
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|||||||||||||| ||||||||||||| ||||| ||||||||| |
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| T |
31114986 |
taaacccttatccacgttgatcaaggccgaaatcattttatttga |
31115030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 32226468 - 32226535
Alignment:
| Q |
235 |
tcaattcatattacaaaggctttcccgtgtttgaaaacttaattcaacttcagctagtttggtttgat |
302 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||||||||| || || |||| ||||||||||||||| |
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| T |
32226468 |
tcaattcatattaccaaggctatcatgtgtttgaaaacttagttgaatttcaactagtttggtttgat |
32226535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 24890852 - 24890893
Alignment:
| Q |
235 |
tcaattcatattacaaaggctttcccgtgtttgaaaacttaa |
276 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
24890852 |
tcaattcatattacaaaggttttcctgtgtttgaaaacttaa |
24890893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 32242182 - 32242115
Alignment:
| Q |
235 |
tcaattcatattacaaaggctttcccgtgtttgaaaacttaattcaacttcagctagtttggtttgat |
302 |
Q |
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|||||||||||||| |||||| || |||||||||||||||| | |||||| ||| ||||||||||| |
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| T |
32242182 |
tcaattcatattaccaaggctatcatgtgtttgaaaacttaactgaacttcgactattttggtttgat |
32242115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 135
Target Start/End: Complemental strand, 32242657 - 32242555
Alignment:
| Q |
33 |
taaacccttatccaagttgatcaaggccaaaatccatttatttgatattccgttcaaagcagtttataatgtcgagtttctaacagtattagaggtatca |
132 |
Q |
| |
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|||||| |||||||||||||| || ||||| |||| |||||| ||| || || ||| |||||||| |||||| | |||||||| ||| |||||||| | |
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| T |
32242657 |
taaacctttatccaagttgattaaagccaatatccgtttattcgatgttacgctcagagcagtttctaatgtgcaatttctaactgtaacagaggtatga |
32242558 |
T |
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| Q |
133 |
tat |
135 |
Q |
| |
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||| |
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|
| T |
32242557 |
tat |
32242555 |
T |
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