View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_low_33 (Length: 268)
Name: NF20029_low_33
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_low_33 |
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| [»] scaffold0620 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 34100656 - 34100771
Alignment:
| Q |
105 |
aacaatgctttagattcaaacaatttttattattttctttgtctaaatttgagttctttttaatattaatttgcatacccacagaagtcggtggcgaaga |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34100656 |
aacaatgctttagattcaaacaatttttattattttctttgtctaaatttgagttctttttaatattaatttgcatacccacagaagtcggtggcgaaga |
34100755 |
T |
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| Q |
205 |
tgttgtattctgatat |
220 |
Q |
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| T |
34100756 |
tgttgtattctgatat |
34100771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 34149515 - 34149561
Alignment:
| Q |
40 |
aggagatatcccaaaaggagatcttgggcaaaatccaaggcaagttt |
86 |
Q |
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| T |
34149515 |
aggagataccccaaaaggagatctttggcaaaatccaaggcaagttt |
34149561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 34162131 - 34162177
Alignment:
| Q |
40 |
aggagatatcccaaaaggagatcttgggcaaaatccaaggcaagttt |
86 |
Q |
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| T |
34162131 |
aggagataccccaaaaggagatctttggcaaaatccaaggcaagttt |
34162177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 34115282 - 34115363
Alignment:
| Q |
5 |
atgaatgaatcaattttatgagatactccgaaagaaggagatatcccaaaaggagatcttgggcaaaatccaaggcaagttt |
86 |
Q |
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| T |
34115282 |
atgaatcattcaatttttggagatactccaaacggagtaaataccccagaaggagatctttggcaaaatccaaggcaagttt |
34115363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 34169426 - 34169470
Alignment:
| Q |
42 |
gagatatcccaaaaggagatcttgggcaaaatccaaggcaagttt |
86 |
Q |
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| T |
34169426 |
gagataccccaaaaggagatctttggcaaaatccaaggtaagttt |
34169470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 34091594 - 34091637
Alignment:
| Q |
43 |
agatatcccaaaaggagatcttgggcaaaatccaaggcaagttt |
86 |
Q |
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| T |
34091594 |
agatacccgaaaaggagatcttgggtaaaatccaaggcaagttt |
34091637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 34109301 - 34109362
Alignment:
| Q |
25 |
agatactccgaaagaaggagatatcccaaaaggagatcttgggcaaaatccaaggcaagttt |
86 |
Q |
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|||||| || |||| || ||||| || |||||||||||||||| |||||| ||||||||||| |
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| T |
34109301 |
agataccccaaaaggagtagatacccgaaaaggagatcttgggtaaaatctaaggcaagttt |
34109362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 34119957 - 34119998
Alignment:
| Q |
43 |
agatatcccaaaaggagatcttgggcaaaatccaaggcaagt |
84 |
Q |
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| T |
34119957 |
agatacccaaaaaggagatcttgggtaaaatccaaggcaagt |
34119998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 34147127 - 34147159
Alignment:
| Q |
52 |
aaaaggagatcttgggcaaaatccaaggcaagt |
84 |
Q |
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| T |
34147127 |
aaaaggagatcttgggtaaaatccaaggcaagt |
34147159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 34159743 - 34159775
Alignment:
| Q |
52 |
aaaaggagatcttgggcaaaatccaaggcaagt |
84 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
34159743 |
aaaaggagatcttgggtaaaatccaaggcaagt |
34159775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 6928 - 6976
Alignment:
| Q |
43 |
agatatcccaaaaggagatcttgggcaaaatccaaggcaagtttctttg |
91 |
Q |
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| T |
6928 |
agatacccgaaaaggagatcttgggtaaaatccaaggcaagtttttttg |
6976 |
T |
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