View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_low_35 (Length: 263)
Name: NF20029_low_35
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 1345570 - 1345788
Alignment:
| Q |
10 |
attattctgtcttcagtggcttcaaaaggaattgttacttgttcgacaataaaattgacttgagggaagcagatgagcattgagaagggaaaattccact |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1345570 |
attattttgtcttcagtggcttcaaaaggaattgttacttgttctgcaataaaattgacttgagggaagcagatgagcattgagaagggaaaattccact |
1345669 |
T |
|
| Q |
110 |
gaccattgaaaatgaaatctttaactttgtttgttaaatttgcatcaagatgagggatatttaactgagaagctatggagacaccacaccaattatcaag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1345670 |
gaccattgaaaatgaaatctttaactttgtttgttaaatttgcatcaagatgagggatatttaactgagaagctatggagacaccacaccaattatcaag |
1345769 |
T |
|
| Q |
210 |
tcgaaagttgatgtcatta |
228 |
Q |
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| |||||||||||||||| |
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| T |
1345770 |
ccaaaagttgatgtcatta |
1345788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 31135765 - 31135579
Alignment:
| Q |
17 |
tgtcttcagtggcttcaaaaggaattgttacttgttcgacaataaaattgacttgagggaagcagatgagcattgagaagggaaaattccactgaccatt |
116 |
Q |
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||||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
31135765 |
tgtcttcagtgacttcaaaaggaattgctacttgttctgcaataaagctgacttgagggaaacagatgagcattgaggagggaaaattccactgaccatt |
31135666 |
T |
|
| Q |
117 |
gaaaatgaaatctttaactttgtttgttaaatttgcatcaagatgagg---gatatttaactgagaagctatggagacaccacaccaatta |
204 |
Q |
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| T |
31135665 |
gagaatgaaatctttaactt----tgttaaatttgcatgcagatgaggagagatatttaactgagaagctacgggggcaccgcaccaatta |
31135579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 7577548 - 7577317
Alignment:
| Q |
19 |
tcttcagtggcttcaaaaggaattgttacttgttcgacaataaaattgacttgagggaagcagatgagcattgagaagggaaaattccactgaccattga |
118 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| ||||||| | ||||| || | |||||||| |||||||| |
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| T |
7577548 |
tcttcagtggcttcaaaaggaattgttacttgttcagcaagaaatttgacttgagggaaatagatgagaacagagaaagggacattccactaaccattga |
7577449 |
T |
|
| Q |
119 |
aaatgaaatctttaactttgtttgttaaatttgcatcaagatg---agggatatttaactgagaagctatggagacaccacaccaattatcaagtcgaaa |
215 |
Q |
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|||||| ||||| ||||| ||||| ||| ||| ||||| ||| ||||||| |||||| ||||||||||||||||||||||| ||||| | || |
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| T |
7577448 |
gaatgaagtctttgactttagcagttaagtttccatgcagatgtgtaggaatatttagctgagaggctatggagacaccacaccaattgtcaagccagaa |
7577349 |
T |
|
| Q |
216 |
gttgatgtcattaccattaccaagctgccaac |
247 |
Q |
| |
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|| |||| |||||||||||||||||||||| |
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| T |
7577348 |
atttatgttgttaccattaccaagctgccaac |
7577317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 14722314 - 14722074
Alignment:
| Q |
10 |
attattctgtcttcagtggcttcaaaaggaattgttacttgttcgacaataaaattgacttgagggaagcagatgagcattgagaagggaaaattccact |
109 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14722314 |
attattttgtcttcagtggtttcaaaaggaattgttacttgttctgcaataaaattgacttgagggaagcagacgagcattgagaagggaaaattccact |
14722215 |
T |
|
| Q |
110 |
gaccattgaaaatgaaatctttaactttgtttgttaaatttgcatcaa---gatgagggatatttaactgagaagctatggagacaccacaccaattatc |
206 |
Q |
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||| ||||||||| ||||||||||||||| ||||||||||| ||| || || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14722214 |
gactattgaaaatcaaatctttaactttgattgttaaattttcatgaagacgaggagggatatttaactgagaagctatggagacaccacaccaattatc |
14722115 |
T |
|
| Q |
207 |
aagtcgaaagttgatgtcattaccattaccaagctgccaac |
247 |
Q |
| |
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||| | ||||||||||||||||||||||||||||||||||| |
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| T |
14722114 |
aagccaaaagttgatgtcattaccattaccaagctgccaac |
14722074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 12219657 - 12219899
Alignment:
| Q |
8 |
agattattctgtcttcagtggcttcaaaaggaattgttacttgttcgacaataaaattgacttgagggaagcagatgagcattgagaagggaaaattcca |
107 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||| |||||| ||| ||| ||||| |||||||| ||||||| | || || || | |||||| |
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| T |
12219657 |
agattatcttgtcttcagtggcttcaaaatgaattgttatttgttcagcaagaaatttgacctgagggaaatagatgagaacagaaaaagggacattcca |
12219756 |
T |
|
| Q |
108 |
ctgaccattgaaaatgaaatctttaactttgtttgttaaatttgcatcaagat---gagggatatttaactgagaagctatggagacaccacaccaatta |
204 |
Q |
| |
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||||||||||| |||||| ||||| ||||| ||||| ||| ||| |||| |||| ||||||| |||||| ||||||||||||||||||||||| |
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| T |
12219757 |
ctgaccattgagaatgaagtctttgactttagcagttaagtttccatgcagatgtggaggaatatttagctgagaggctatggagacaccacaccaattg |
12219856 |
T |
|
| Q |
205 |
tcaagtcgaaagttgatgtcattaccattaccaagctgccaac |
247 |
Q |
| |
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||||| | || || ||||| |||||||||||||| ||||||| |
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| T |
12219857 |
tcaagccagaaatttatgtcgttaccattaccaagttgccaac |
12219899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 28185534 - 28185765
Alignment:
| Q |
17 |
tgtcttcagtggcttcaaaaggaattgttacttgttcgacaataaaattgacttgagggaagcagatgagcattgagaagggaaaattccactgaccatt |
116 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| | ||| || |||||||| |||| | ||||||| | ||| | |||| ||||||||||||||| |
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|
| T |
28185534 |
tgtcttcagtggcttcaaaaggaatagctacttgtttggcaagcaatttgacttgtgggatgaagatgagaacggaggaaggaacattccactgaccatt |
28185633 |
T |
|
| Q |
117 |
gaaaatgaaatctttaactttgtttgttaaatttgcatcaagat---gagggatatttaactgagaagctatggagacaccacaccaattatcaagtcga |
213 |
Q |
| |
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||||||||| ||||| ||||| ||||| ||| | | | || |||| ||||| | |||||| ||||| ||||||||||||||||| ||||| | |
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|
| T |
28185634 |
gaaaatgaagtcttttactttagcagttaagtttccgtgcatatggggaggaatattaagctgagaggctatagagacaccacaccaattgtcaagccag |
28185733 |
T |
|
| Q |
214 |
aagttgatgtcattaccattaccaagctgcca |
245 |
Q |
| |
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|| || ||||| | ||||||||||||||||| |
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|
| T |
28185734 |
aaatttatgtcttcgccattaccaagctgcca |
28185765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 51294588 - 51294621
Alignment:
| Q |
213 |
aaagttgatgtcattaccattaccaagctgccaa |
246 |
Q |
| |
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||||||||||||||| |||||||||||||||||| |
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|
| T |
51294588 |
aaagttgatgtcattgccattaccaagctgccaa |
51294621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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