View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_low_38 (Length: 254)
Name: NF20029_low_38
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 13590645 - 13590406
Alignment:
| Q |
1 |
tacattaagatgtggttcaaataaaatatat--taaaaaattgaaatctaccttgtattgttgcatagcaaacaattcaacatcctagaccaagctatcc |
98 |
Q |
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| T |
13590645 |
tacattaagatgtggttcaaataaaatatatattgaaaaattgaaatctaccttgtattgttgcatagcaaacaattcaacatcctagaccaagctatcc |
13590546 |
T |
|
| Q |
99 |
ttaaacgaggataaattctgttgctatatgttgttgattccctcataacagattccatggtttctacaaataggttcaagcttcttattggtggaatata |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13590545 |
ttaaacgaggataaattctgttgctatatgttgttgattccctcataacagattccatggtttctacaaataggttcaagcttcttattggtggaatata |
13590446 |
T |
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| Q |
199 |
aagtgttaaaggaacaacagagaaagccactgtgaagaat |
238 |
Q |
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| T |
13590445 |
aagtgttaaaggaacaacagagaaagccactgtgaagaat |
13590406 |
T |
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Back To:
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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 9190647 - 9190723
Alignment:
| Q |
151 |
ttccatggtttctacaaataggttcaagcttcttattggtggaatataaagtgttaaaggaacaacagagaaagcca |
227 |
Q |
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|||||||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||| |||||||||||| |
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| T |
9190647 |
ttccatggtttccacaaaagaattcaagcttctgattggtggaatatagagaattaaaggaacagcagagaaagcca |
9190723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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