View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_low_39 (Length: 254)
Name: NF20029_low_39
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 12104966 - 12104739
Alignment:
| Q |
12 |
ataggttatatcaaatagtagaagatcttcaagatttagacaattatctgtaaggaaaataagatcatcgccttgttgaaagcgaatgtatttcaaatgt |
111 |
Q |
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| T |
12104966 |
ataggttatatcaaatagtagaagatcttcaagatttggacaattatctgtaaggaaaataagatcatcgccttgttgaaagcgaatgtatttcaaatgt |
12104867 |
T |
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| Q |
112 |
agggttttgagtgagggtaatgttacgagagtaatattaaactccttacccatattgagaaaactgagcttaagaacaactagggtttcacaagtaagga |
211 |
Q |
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| T |
12104866 |
agggttttgagtgagggtaatgttacgagagtaatattaaactccttacccatattgagaaaactaagcttaagaacaactagggtttcacaagtaagga |
12104767 |
T |
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| Q |
212 |
tagaataaggaagatgagggatcattct |
239 |
Q |
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| T |
12104766 |
tagaataaggaagatgagggatcattct |
12104739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 12094470 - 12094396
Alignment:
| Q |
165 |
attgagaaaactgagcttaagaacaactagggtttcacaagtaaggatagaataaggaagatgagggatcattct |
239 |
Q |
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| T |
12094470 |
attgagaaaaccgagcttaagaacaacgagggttgcacaagtaaggatagaataaggcagatgagggatcattct |
12094396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 1446370 - 1446488
Alignment:
| Q |
96 |
aatgtatttcaaatgtagggttttgagtgagggtaatgttacgagagtaatattaaact-ccttacccatattgagaaaactgagcttaagaacaactag |
194 |
Q |
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| T |
1446370 |
aatgtctttcaaatgtagggttttgagtgaaggtaatattatggga-taataacaaaatgccggacccatataaagataactgagcttaagaacaacaag |
1446468 |
T |
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| Q |
195 |
ggtttcacaagtaaggatag |
214 |
Q |
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| T |
1446469 |
ggttgtacaagtaagaatag |
1446488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 1459773 - 1459818
Alignment:
| Q |
96 |
aatgtatttcaaatgtagggttttgagtgagggtaatgttacgaga |
141 |
Q |
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| T |
1459773 |
aatgtctttcagatgtagggttttgagtgagggtaatcttatgaga |
1459818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 45810966 - 45810998
Alignment:
| Q |
102 |
tttcaaatgtagggttttgagtgagggtaatgt |
134 |
Q |
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| T |
45810966 |
tttcaaatgtagggttttgagtgaaggtaatgt |
45810998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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