View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_low_4 (Length: 508)
Name: NF20029_low_4
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 5 - 494
Target Start/End: Complemental strand, 53104893 - 53104404
Alignment:
| Q |
5 |
cccagtttcagctggtcatgctataaaatttgaaacactgcatgatattcgtcccttgttgctggagcatgttgaaatattatcaaacaagagtgttgta |
104 |
Q |
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| T |
53104893 |
cccagtttcagctggtgatgctataaaatttgaaacactgcatgatatgcgtcccttgttgctggaacatgttgaaatattatcaaacaagagtgttgta |
53104794 |
T |
|
| Q |
105 |
caatcgagttcagaaatttctgcttcagttgctccaagtgaaggcataaaaatttcaaatgctaaccatacatgcaataagcaccgcaaaaaagcatgag |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
53104793 |
caatcgagttcagaaatttctgcttcagttgctccaagtgaaggcataaaaatttcaaatgctaaccatacatgcaataagcaccgcaaaaaagcatgtg |
53104694 |
T |
|
| Q |
205 |
agaaaaacctgccaaagtcttcactgttgaaggaacttagcagattaggtcttcccaaatccacattagaaatgatgaataaagatttgagacatcgaag |
304 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53104693 |
agaaaaacctgccaaagtcttcacttttgaaggaacttagcagattaggtgttcccaaatccacattagaaatgatgaataaagatttgagacatcgaag |
53104594 |
T |
|
| Q |
305 |
agatatgacaaatgttcgagttctgtttagtcaacatttggatggcaatgtcctcaagcaacaacagaaggtaaattattgcttttatgtttatgatagg |
404 |
Q |
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| T |
53104593 |
agatatgacaaatgttcgagttctgtttagtcaacagttggatggcaatgtcctcaagcaacaacagaaggtaaattattgcttttatgtttatgatagg |
53104494 |
T |
|
| Q |
405 |
agtctaggagatgctaaatgttgtgattatcgactagtgatgttgttctatcctccttgcagatcttggcgcgtcttaatatatctactg |
494 |
Q |
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| T |
53104493 |
agtctaggagatgctaaatgttgtgattatcgactagtgatgttgttctatcctccttgcagatcttggcgcgtcttaatatatctactg |
53104404 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 5 - 494
Target Start/End: Complemental strand, 43917600 - 43917119
Alignment:
| Q |
5 |
cccagtttcagctggtcatgctataaaatttgaaacactgcatgatattcgtcccttgttgctggagcatgttgaaatattatcaaacaagagtgttgta |
104 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43917600 |
cccagtttcagctggtgatgctataaaatttgaaaacctgcatgatatgcgtcccttgttgctggcacatgttgaaatattatcaaacaagagtgttgta |
43917501 |
T |
|
| Q |
105 |
caatcgagttcagaaatttctgcttcagttgctccaagtgaaggcataaaaatttcaaatgctaaccatacatgcaataagcaccgcaaaaaagcatgag |
204 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | |
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| T |
43917500 |
caatcgagttcagaaatttccgcttcagttggtccaagtgaaggcataaaaatttcaaatgctaaccacacatgcaatgagcaccgcaaaaaagcatgtg |
43917401 |
T |
|
| Q |
205 |
agaaaaacctgccaaagtcttcactgttgaaggaacttagcagattaggtcttcccaaatccacattagaaatgatgaataaagatttgagacatcgaag |
304 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
43917400 |
agaaaaacctgccaaagtcttcacttttgaaggaacttatcagattaggtgttcccaaatccacatcagaaatgatgagtaaagatttgagacatcgaag |
43917301 |
T |
|
| Q |
305 |
agatatgacaaatgttcgagttctgtttagtcaacatttggatggcaatgtcctcaagcaacaacagaaggtaaattattgcttttatgtttatgatagg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
43917300 |
agatatgacaaatgttcgagttctgtttagtcaacatttggatgacaatgtcctcaagcagcaacagaaggtaaattattgcttttatgcttatga---- |
43917205 |
T |
|
| Q |
405 |
agtctaggagatgctaaatgttgtgattatcgactagtgatgttgttctatcctccttgcagatcttggcgcgtcttaatatatctactg |
494 |
Q |
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| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43917204 |
----ttggagatgctaaatgttgtgattatcaactagtgatgttgttttatcctccttgcagatcttggcgcgtcttaatatatctactg |
43917119 |
T |
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