View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_low_42 (Length: 251)
Name: NF20029_low_42
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 3587626 - 3587425
Alignment:
| Q |
13 |
aatatcttagttgagaaaataattccatatctagcctcccaaatcatccgaacaattatgtgtcaaaaagaagttacatctttacaatgattattgttgc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3587626 |
aatatcttagttgagaaaataattccatatctagcctcccaaatcatccgaacaattatgtgtcaaaaagaagttacatctttacaatgattattgttgc |
3587527 |
T |
|
| Q |
113 |
aagaagagaaagagaaataatactgttttgtaataacaaaatcgacagatctagccatacagcggatatagaattaatcaggtaatgattattggtgtag |
212 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3587526 |
aagaagagaaagagaaataatacagttttgtaataacaaaatcgacagatctagccatgcagcggatatagaattaatcaggtaatgattattggtgtag |
3587427 |
T |
|
| Q |
213 |
tt |
214 |
Q |
| |
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|| |
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| T |
3587426 |
tt |
3587425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 10007333 - 10007454
Alignment:
| Q |
13 |
aatatcttagttgagaaaataattccatatctagcctcccaaatcatccgaacaattatgtgtcaaaaagaagttacatctttacaatgattattgttgc |
112 |
Q |
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|||||||||||||||||||||||||| ||| || ||||||||||| ||| ||| || ||||||||| | ||||||| ||||| ||||||||||||||| |
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| T |
10007333 |
aatatcttagttgagaaaataattccttatttaacctcccaaatcttccaaacggttgtgtgtcaaataagagttacacctttataatgattattgttgc |
10007432 |
T |
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| Q |
113 |
aagaagagaaagagaaataata |
134 |
Q |
| |
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||||| ||| || |||||||| |
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| T |
10007433 |
aagaaatgaacgaaaaataata |
10007454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 9994609 - 9994702
Alignment:
| Q |
92 |
ctttacaatgattattgttgcaagaagagaaagagaaataatactgttttgtaataacaaaatcgacagatctagccatacagcggatatagaa |
185 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||| || | ||||| || |||| | |||||||||||| || ||||||||||| |
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| T |
9994609 |
ctttacaatgattattgttgcaagaagaaaaggagaaataataaagtatcgtaatgacggaatcaatagatctagccatgcaacggatatagaa |
9994702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 9977240 - 9977346
Alignment:
| Q |
13 |
aatatcttagttgagaaaataattccatatctagcctcccaaatcatccgaacaattatgtgtcaaaaagaagttacatctttacaatgattattgttgc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||| ||| ||| || ||||||||| | |||||| | ||| ||||||||||||||| |
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| T |
9977240 |
aatatcttagttgagaaaataattccatatgtaacctcccaaatattccaaacgat--tgtgtcaaatacgagttac-gccttataatgattattgttgc |
9977336 |
T |
|
| Q |
113 |
aagaagagaa |
122 |
Q |
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||||| |||| |
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|
| T |
9977337 |
aagaaaagaa |
9977346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 5670783 - 5670825
Alignment:
| Q |
92 |
ctttacaatgattattgttgcaagaagagaaagagaaataata |
134 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
5670783 |
ctttacaatgattattgttgcaagaagaggaggagaaataata |
5670825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 5680276 - 5680318
Alignment:
| Q |
92 |
ctttacaatgattattgttgcaagaagagaaagagaaataata |
134 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
5680276 |
ctttacaatgattattgttgcaagaagaggaggagaaataata |
5680318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 5694428 - 5694469
Alignment:
| Q |
92 |
ctttacaatgattattgttgcaagaagagaaagagaaataat |
133 |
Q |
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||||||||||||||||||||||||||||| | |||||||||| |
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| T |
5694428 |
ctttacaatgattattgttgcaagaagaggaggagaaataat |
5694469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 9429830 - 9429790
Alignment:
| Q |
94 |
ttacaatgattattgttgcaagaagagaaagagaaataata |
134 |
Q |
| |
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||||||||||| |||||||||||| || ||||||||||||| |
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| T |
9429830 |
ttacaatgatttttgttgcaagaaaaggaagagaaataata |
9429790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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