View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_low_5 (Length: 475)
Name: NF20029_low_5
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 4753422 - 4753877
Alignment:
| Q |
1 |
attaggtttgaggatttcatggtgtctcaccatacagttgttcctcatttcatgtaatatattcaaatatattaattgtttatgctttagtcataagtag |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4753422 |
attaggcttgaggatttcatggtgtctcaccatacagttgttcctcatttcatgtaatatattcaaatatattaattgtttatgctttagtcataagtag |
4753521 |
T |
|
| Q |
101 |
ctaatttattttggattaggtcttggatgaatctatttccagctgattgaaacatgtagttgtgaaactatattcaatgcaattacaatcctagtatgta |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
4753522 |
ctaatttattttggattaggttttggatgaatctattttcagctgattgaaacatgtagttgtgaaactatattcaatgcaattacaattctagtctgta |
4753621 |
T |
|
| Q |
201 |
ttcatcattaactcattcttaatgccttttatatcttgatcacatatgaattgatcttaaatatcaagtgattgattactagcattaactgttgaatttg |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
4753622 |
ttcatcattaattcattcttaatgccttttatatcttgatcacatatgaattgatcttaaatatcaag----tgattactagcattaagtgttgaatttg |
4753717 |
T |
|
| Q |
301 |
atctaataatatta-tcaacctaacggtcactatagaaatattggattgctaaactgtgatttgaaaattatcattgaattgccttcgaactcacatatg |
399 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4753718 |
atctaataatattattcaacctaacggtcactatagaaatattggattgctaaactgtgatttgaaaattatcattgaaaagccttcgaactcacatatg |
4753817 |
T |
|
| Q |
400 |
agattatgaggttgtaattggagaagagggttctgagtgaagaggtttatcatacctatt |
459 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4753818 |
agattatgaggttgtaatcggagaagagggttctgagtgaagaggtttatcatacctatt |
4753877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 26390724 - 26390884
Alignment:
| Q |
42 |
tcctcatttcatgtaatatattcaaatatattaattgtttatgctttagtcataagtagctaatttattttggattaggtcttggatgaatctatttcca |
141 |
Q |
| |
|
|||| ||| |||||||| |||||||| ||||| ||||| ||| ||||| ||| || | |||||||| | |||||||||||||||||||| ||| | | |
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| T |
26390724 |
tccttattgcatgtaatgtattcaaacttattagttgtt-atgttttagccatgaggaactaatttaccattgattaggtcttggatgaatcgattacaa |
26390822 |
T |
|
| Q |
142 |
gctgattgaaacatgtagttgtgaaactatattcaatgcaattacaatcctagtatgtattca |
204 |
Q |
| |
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|| ||||| |||||| || ||||||| |||||||| |||||||||||| ||| | |||||| |
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|
| T |
26390823 |
t-tgtttgaaccatgtaattttgaaactctattcaattcaattacaatcccagtctttattca |
26390884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 21023825 - 21023768
Alignment:
| Q |
147 |
ttgaaacatgtagttgtgaaactatattcaatgcaattacaatcctagtatgtattca |
204 |
Q |
| |
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||||| |||||| |||||||||| |||||||| |||||||||||| ||| | |||||| |
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|
| T |
21023825 |
ttgaaccatgtaattgtgaaactctattcaattcaattacaatcccagtctttattca |
21023768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 256
Target Start/End: Complemental strand, 25925423 - 25925394
Alignment:
| Q |
227 |
ttttatatcttgatcacatatgaattgatc |
256 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
25925423 |
ttttatatcttgatcacatatgaattgatc |
25925394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 19355323 - 19355263
Alignment:
| Q |
70 |
tattaattgtttatgctttagtcataagtagctaatttattttggattaggtcttggatga |
130 |
Q |
| |
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||||| ||||||||| |||||||||| ||| |||||| |||| ||||||||||| ||||| |
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| T |
19355323 |
tattagttgtttatgttttagtcataggtaactaattcatttgtgattaggtcttagatga |
19355263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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