View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_low_54 (Length: 225)
Name: NF20029_low_54
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_low_54 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 3152801 - 3152589
Alignment:
| Q |
13 |
catcataaagcagaactagaagcgaatatcaacaaagtgataaggcaaaacaaacagaaactatactttaaagtttaaccaactgacataagcaaatcaa |
112 |
Q |
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| T |
3152801 |
catcataaagcagaactagaagcgaatatcaacaaagtcataaggcaaaacaaacagaaactatactttaaagtttaaccaactgacataagcaaatcaa |
3152702 |
T |
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| Q |
113 |
caaatatatcaacacttgaagctaaatccaatcatgtcttcaatcttcattgttgaggacaaaccataaacatgtgtgtcgagattccatagcaaaggta |
212 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3152701 |
caaatatatcaacacttgaagctaaatcaaatcatgtcttcaatcttcattgttgaggacaaaccataaacatgtgtgtcgagattccgtagcaaaggta |
3152602 |
T |
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| Q |
213 |
gacaccaagtaag |
225 |
Q |
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| T |
3152601 |
gacaccaagtaag |
3152589 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 26388232 - 26388188
Alignment:
| Q |
140 |
ccaatcatgtcttcaatcttcattgttgaggacaaaccataaaca |
184 |
Q |
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| T |
26388232 |
ccaattatgtctccaatcttcactgttgaggacaaaccaaaaaca |
26388188 |
T |
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