View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_low_56 (Length: 224)
Name: NF20029_low_56
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 36289914 - 36290105
Alignment:
| Q |
14 |
gtgagaagaatctttttgagagaatctctagacaaaccaagaatatgcatgaaagcagtcatagcatcagcaacagaagataaattagcaggtaaattct |
113 |
Q |
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| T |
36289914 |
gtgagaagaatctttttgagagaatctctagacaaaccaagaatatgcatgaaagcagtcatagcatcagcaacagaagataaattagcaggtaaattct |
36290013 |
T |
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| Q |
114 |
ctaactcattagcattagaagcaagcttctcattaatcttcttgatgatctctggcaaagtttttgagataatcatagcttgaacctgaaca |
205 |
Q |
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| T |
36290014 |
ctaactcatttgcattagaagcaagcttctcattaatcttcttgatgatctctggcaaagtttttgagataatcatagcttgaacctgaaca |
36290105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 36312400 - 36312588
Alignment:
| Q |
17 |
agaagaatctttttgagagaatctctagacaaaccaagaatatgcatgaaagcagtcatagcatcagcaacagaagataaattagcaggtaaattctcta |
116 |
Q |
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| T |
36312400 |
agaagaatctttctcaaggaatctcttgacagagaaacaatatgcagaaaagcagacatagcatcagccaatgaagataaattgggaggcaaaatcttta |
36312499 |
T |
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| Q |
117 |
actcattagcattagaagcaagcttctcattaatcttcttgatgatctctggcaaagtttttgagataatcatagcttgaacctgaaca |
205 |
Q |
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| T |
36312500 |
actcatgtacactattataaagcttctcattgatcttcttaattatctcaggcaaagtttttgaaataatcatagcttgcacatgaaca |
36312588 |
T |
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