View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_low_6 (Length: 463)
Name: NF20029_low_6
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 11 - 448
Target Start/End: Complemental strand, 29121037 - 29120596
Alignment:
| Q |
11 |
atcatcaaggagaagtaaatacaatactaacatcatttttaatatttctcacacaaaaatgttttggaaattggtgatcaaactagagtgacttctgagt |
110 |
Q |
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| T |
29121037 |
atcatcaaggagaagtaaatacaatactaacatcatttttaatatttctcacacacaaatgttttggaaattggtgatcaaactagagtgacttctgagt |
29120938 |
T |
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| Q |
111 |
tatggttcaatcacggtcgaactagatcactaataaataaatacaaggnnnnnnnn-tatgttgaactaaccgtggttaaatttggttcaatcagattcg |
209 |
Q |
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| T |
29120937 |
tatggttcaatcacggtcgaactagatcactaataaataaatacaaggaaaaaaaaatatgttgaactaaccgtggttaaatttggttcaatcagattcg |
29120838 |
T |
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| Q |
210 |
actagactacta---atacgttttaaatagagttgaagcaaactacatttttggtttgactgattgaactgaaaagttcggtccaatttttaaaacacga |
306 |
Q |
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| T |
29120837 |
actagacgactaccaatacgttttaaatagagttgaagcaaactacatttttggtttgactgattgaactgaaaagttcggtccaatttttaaaacacga |
29120738 |
T |
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| Q |
307 |
cgtacacgtacatgtaactttgtaatgtacttttggttattcatcatcctttttgtgatttgaactgacagagtctaatgataaatgataccctgagctc |
406 |
Q |
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| T |
29120737 |
cgtacacgtacatgtaactttgtaatgtacttttggttattcatcatcctttttgtgatttgaactgacagagtctaatgataaatgataccctgagctc |
29120638 |
T |
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| Q |
407 |
agttgcaaagcttcagatggcactaacagtggctgatgcatt |
448 |
Q |
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| T |
29120637 |
agtagcaaagcttcagatggcactaacagtggctgatgcatt |
29120596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 444
Target Start/End: Original strand, 32774637 - 32774706
Alignment:
| Q |
375 |
cagagtctaatgataaatgataccctgagctcagttgcaaagcttcagatggcactaacagtggctgatg |
444 |
Q |
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|||||||| ||||||||||| ||| ||||||||| ||||||||||||||||||| ||| ||| ||||||| |
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| T |
32774637 |
cagagtctcatgataaatgacaccttgagctcagctgcaaagcttcagatggcattaatagttgctgatg |
32774706 |
T |
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