View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_low_9 (Length: 424)
Name: NF20029_low_9
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 7 - 406
Target Start/End: Original strand, 52409214 - 52409613
Alignment:
| Q |
7 |
cgagtgagatgaagttggcaatggtaataatgatacggttgcagctggtgctggggcaagttcgtcttcaaccactgacttggctggcagtggtgctgtt |
106 |
Q |
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| T |
52409214 |
cgagtgtgatgaagttggcaatggtaataatgatacggttgcagctggtgctggggcaagttcgtcttcaaccactgacttggctggcagtggtgctgtt |
52409313 |
T |
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| Q |
107 |
cttatgatgttactctgtgtgtgcccgatcattcttcttaccttcattgtctctgtaatatttcctgcaaagttggacataaagattaattgtacacaag |
206 |
Q |
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| T |
52409314 |
cttatgatgttactctgtgtgtgcccgatcattcttcttaccttcattgtctctgtaatatttcctgcaaagttggaaataaagattaattgtacacaag |
52409413 |
T |
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| Q |
207 |
cctaattaaggtgcaaattaactatatcaattttggttaataagaagtgttagaactaagttagaagattggtttgttaccatttaattcaaggtcggct |
306 |
Q |
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| T |
52409414 |
cctaattaaggtgcaaattaaatatatcaattttggttaataagaagtgttagaactaagttagaagattggtttgttaccatttaattcaaggtcggct |
52409513 |
T |
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| Q |
307 |
ttcgaattctctgacaagagaataagtgttggtgtgattaatgtaaggaaagcccaaaagacaaatgttggaattagagttctttctctcatcatcatat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52409514 |
ttcgaattctctgacaagagaataagtgttggtgtgattaatgtaaggaaagcccagaagacaaatgttggaattagagttctttctctcatcatcatat |
52409613 |
T |
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