View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20030_high_3 (Length: 372)
Name: NF20030_high_3
Description: NF20030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20030_high_3 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 372
Target Start/End: Original strand, 1516210 - 1516568
Alignment:
| Q |
14 |
caaacatggtaatggcatcacccattacatcttgttctacgtaagctttgtttactatagcaattatcaccgttttgttatttcccattgaagctttggc |
113 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1516210 |
caaacatggtaacggcatcacccattacatcttgttctacgtaagctttgtttactatagcaattatcaccgttttgttatttcccattgaagctttggc |
1516309 |
T |
|
| Q |
114 |
caaagctttgtcaagtccatcaccatatgcttcattaatattggagctctgcaataataataaagaaaaacaaatttttgacaatttcaagcaagttgtt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1516310 |
caaagctttgtcaagtccatcaccatatgcttcattaatattggagctctgcaataataataaagaaaaacaaatttttgacaatttcaagcaagttgtt |
1516409 |
T |
|
| Q |
214 |
agaatttgactataactcaatcttacaaaactgattcgtaagacgaagattgtccccacaaaattaaacacattttcaagtcttattttatctagtgttg |
313 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | |||| |
|
|
| T |
1516410 |
agaatttgactataactcaatcttataaaactgattcgtaagacgaagattgtccccacaaaattaaatacattttcaagtcttatcttatcttgcgttg |
1516509 |
T |
|
| Q |
314 |
gacttaattaaccatataaaaccaacttgtaagatgaaaattgtcgatttgtacgtacc |
372 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1516510 |
gacttaattaaccatataaaatcaacttgtaagatgaaaattgtcgatttgaacgtacc |
1516568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 1520407 - 1520569
Alignment:
| Q |
14 |
caaacatggtaatggcatcacccattacatcttgttctacgtaagctttgtttactatagcaattatcaccgttttgttatttcccattgaagctttggc |
113 |
Q |
| |
|
||||||| || |||| |||||| |||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1520407 |
caaacatagtgatggtatcaccatttacatcttgttctacataagccttatttaccatagcaattatcaccgttttgttatttctgattgaagctttggc |
1520506 |
T |
|
| Q |
114 |
caaagctttgtcaagtccatcaccatatgcttcattaatattggagctctgcaataataataa |
176 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |||||||| || || ||||| || ||||||||| |
|
|
| T |
1520507 |
taaagctttgtcaagaccatctccatatgattcattaacataggtgctctacattaataataa |
1520569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 1524373 - 1524479
Alignment:
| Q |
14 |
caaacatggtaatggcatcacccattacatcttgttctacgtaagctttgtttactatagcaattatcaccgttttgttatttcccattgaagctttggc |
113 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||||||||| |||||||| ||||||| |||||| || | |||||||||||||||||||||||||||| |
|
|
| T |
1524373 |
caaacatggtggtgggatcaccctttacatcttgttctacataagctttatttactacagcaataattaatgttttgttatttcccattgaagctttgga |
1524472 |
T |
|
| Q |
114 |
caaagct |
120 |
Q |
| |
|
||||||| |
|
|
| T |
1524473 |
caaagct |
1524479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 16644635 - 16644829
Alignment:
| Q |
14 |
caaacatggtaatggcatcacccattacatcttgttctacgtaagctttgtttactatagcaattatcaccgttttgttatttcccattgaagctttggc |
113 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||| |||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
16644635 |
caaacatggtgatggcatcaccctttacatcttgttctacataagctttatttattatagcaattatcaccgttttgtaatttctcattgaagctttggc |
16644734 |
T |
|
| Q |
114 |
caaagctttgtcaagtccatcaccatatgcttcattaatattggagctctgcaataataataaagaaaaacaaatttttgacaatttcaagcaag |
208 |
Q |
| |
|
|||||||||||||| ||||| | |||| |||||||||||||| ||||| || |||| ||||||||| ||||||| |||| |||||||| |||| |
|
|
| T |
16644735 |
taaagctttgtcaagaccatctctgtatgattcattaatattggtgctctacattaatgataaagaaagacaaattattgaaaatttcaaacaag |
16644829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 31791778 - 31791703
Alignment:
| Q |
14 |
caaacatggtaatggcatcacccattacatcttgttctacgtaagctttgtttactatagcaattatcaccgtttt |
89 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |||||||||||||||||| |
|
|
| T |
31791778 |
caaacatggtaatggcatcaccctttacatcttgttctacataagctttatttactacagcaattatcaccgtttt |
31791703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University