View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20030_high_7 (Length: 246)
Name: NF20030_high_7
Description: NF20030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20030_high_7 |
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| [»] chr7 (4 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 18514582 - 18514812
Alignment:
| Q |
16 |
agtctgtagatatcaagctctcaacatatgccttggctaagctccatgtaatcatattggtgcttttaattctctttactctgttatctctccagttgta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18514582 |
agtctgtagatatcaagctctcaacatatgccttggctaagctccatgtaatcatattggtgcttttaattctctttactctgttatctctccagttgta |
18514681 |
T |
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| Q |
116 |
aagaattgcttggtttgctcggttgattgaaaatatgattgtatcaccatcctccgacaaacacagtggaatcaattgaggaagataatccatttgaaga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18514682 |
aagaattgcttggtttgctcggttgattgaaaatatgattgtatcaccatcctccgacaaacacagtggaatcaattgaggaagataatttatttgaaga |
18514781 |
T |
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| Q |
216 |
ttcatataactaattttaaggaattgagtcc |
246 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
18514782 |
ttcatataactaattttaaggaattgagtcc |
18514812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 246
Target Start/End: Complemental strand, 14076901 - 14076723
Alignment:
| Q |
70 |
tattggtgcttttaattctctttactctgttatctctccagttgtaaagaattgcttggtttgctcggttgattgaaaatatgattgtatcaccatcctc |
169 |
Q |
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||||||| ||||||||||||||||||| ||||||||||| || || | ||||||||||||| || |||||| ||||| | |||| |||| | ||| |
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| T |
14076901 |
tattggtatttttaattctctttactctattatctctccaattatagataattgcttggtttcctgaattgattcccaatatcaatgtaccacctttctc |
14076802 |
T |
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| Q |
170 |
cgacaaacacagtggaatcaattgaggaagataa--tccatttgaagattcatataactaattttaaggaattgagtcc |
246 |
Q |
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| T |
14076801 |
ggagagacacaatggaaacacttgaggaacaacatctctatttgaagattctgataactaattttaagaaattgagtcc |
14076723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 246
Target Start/End: Complemental strand, 14386929 - 14386751
Alignment:
| Q |
70 |
tattggtgcttttaattctctttactctgttatctctccagttgtaaagaattgcttggtttgctcggttgattgaaaatatgattgtatcaccatcctc |
169 |
Q |
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||||||| ||||||||||||||||||| ||||||||||| || || | ||||||||||||| || |||||| ||||| | |||| |||| | ||| |
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| T |
14386929 |
tattggtatttttaattctctttactctattatctctccaattatagataattgcttggtttcctgaattgattcccaatatcaatgtaccacctttctc |
14386830 |
T |
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| Q |
170 |
cgacaaacacagtggaatcaattgaggaagataa--tccatttgaagattcatataactaattttaaggaattgagtcc |
246 |
Q |
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| T |
14386829 |
ggagagacacaatggaaacacttgaggaacaacatctctatttgaagattctgataactaattttaagaaattgagtcc |
14386751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 1985768 - 1985902
Alignment:
| Q |
70 |
tattggtgcttttaattctctttactctgttatctctccagttgtaaagaattgcttggtttgctcggttgattgaaaatatgattgtatcaccatcctc |
169 |
Q |
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||||||| ||||||||||| | |||||| |||||||||| || || |||| |||||||| || | | ||||||| |||||| | ||||||||||| ||| |
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| T |
1985768 |
tattggtacttttaattctttctactctattatctctcctattatagagaaatgcttggtctgttggattgattgcaaatatcaatgtatcaccattctc |
1985867 |
T |
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| Q |
170 |
cgacaaacacagtggaatcaattgaggaagataat |
204 |
Q |
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|| ||| ||| |||| ||||| ||||| |||||| |
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| T |
1985868 |
ggaaaaatacaatggagtcaatcgaggaggataat |
1985902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 14515175 - 14514945
Alignment:
| Q |
16 |
agtctgtagatatcaagctctcaacatatgccttggctaagctccatgtaatcatattggtgcttttaattctctttactctgttatctctccagttgta |
115 |
Q |
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||||||| |||||||| || ||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||| |||||| |||| ||||| |
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| T |
14515175 |
agtctgtcgatatcaaactttcaacatatgccttggccctgctccatgtaattctattggtgcttttgattctctttactctattatctttccaattgta |
14515076 |
T |
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| Q |
116 |
aagaattgcttggtttgctcggttgattgaaaatatgattgtatcaccatcctccgacaaacacagtggaatcaattgaggaagataatccatttgaaga |
215 |
Q |
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||||||||||||| |||| | |||||||| ||||||| ||||||| ||||||| |||| ||||| |||||||||||||||||||||||| ||||||||| |
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| T |
14515075 |
aagaattgcttggcctgcttgattgattgagaatatgagtgtatcaacatcctcagacagacacaatggaatcaattgaggaagataatctatttgaaga |
14514976 |
T |
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| Q |
216 |
ttcatataactaattttaaggaattgagtcc |
246 |
Q |
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| T |
14514975 |
ttcatataactaattttaaggaattgagtcc |
14514945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 18673048 - 18672972
Alignment:
| Q |
26 |
tatcaagctctcaacatatgccttggctaagctccat--gtaatcatattggtgcttttaattctctttactctgtt |
100 |
Q |
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||||||||||||||||||||| |||| | ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18673048 |
tatcaagctctcaacatatgcattggatgtgctccatatgtaatcatattggtgcttttaattctctttactctgtt |
18672972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 6947647 - 6947741
Alignment:
| Q |
72 |
ttggtgcttttaattctctttactctgttatctctccagttgtaaagaattgcttggtttgctcggttgattgaaaatatgattgtatcaccatc |
166 |
Q |
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||||| |||||||||||||||||||| ||||||||||| || || |||| |||||||| || | | |||||| |||||| | |||||||||||| |
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| T |
6947647 |
ttggtacttttaattctctttactctattatctctccaattatagagaaatgcttggtctggtagagtgattgtaaatatcaatgtatcaccatc |
6947741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 6935054 - 6935180
Alignment:
| Q |
78 |
cttttaattctctttactctgttatctctccagttgtaaagaattgcttggtttgctcggttgattgaaaatatgattgtatcaccatcctccgacaaac |
177 |
Q |
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||||||||||||||| || | ||||||||||| || || |||| |||||||| || | | ||||||| |||||| | ||||||||||| | || || | |
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| T |
6935054 |
cttttaattctctttgctgtattatctctccaattatagagaaatgcttggtctggtagattgattgcaaatatcaatgtatcaccattattagaaaagc |
6935153 |
T |
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| Q |
178 |
acagtggaatcaattgaggaagataat |
204 |
Q |
| |
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||| |||||||||| ||||| |||||| |
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| T |
6935154 |
acaatggaatcaatcgaggaggataat |
6935180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 211 - 246
Target Start/End: Original strand, 6921340 - 6921375
Alignment:
| Q |
211 |
gaagattcatataactaattttaaggaattgagtcc |
246 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
6921340 |
gaagattcgtataactaattttaaggaattgagtcc |
6921375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 211 - 246
Target Start/End: Original strand, 6947870 - 6947905
Alignment:
| Q |
211 |
gaagattcatataactaattttaaggaattgagtcc |
246 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |
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| T |
6947870 |
gaagattcacataactaattttaaggaattgagtcc |
6947905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 6947761 - 6947827
Alignment:
| Q |
138 |
ttgattgaaaatatgattgtatcaccatcctccgacaaacacagtggaatcaattgaggaagataat |
204 |
Q |
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||||||| |||||| | ||||||||||| | || |||||||||||||||||||||||| |||||| |
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| T |
6947761 |
ttgattgtaaatatcaatgtatcaccattgttagaaaaacacagtggaatcaattgaggaggataat |
6947827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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