View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20030_low_1 (Length: 530)
Name: NF20030_low_1
Description: NF20030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20030_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 303
Target Start/End: Original strand, 53830073 - 53830367
Alignment:
| Q |
14 |
atcaagcccaaacataatcctcctccttcatctggggatcgtgatatagacatcactggccagtcctatatccagtaataacaacatatatgtaaa-tgc |
112 |
Q |
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| T |
53830073 |
atcaagcccaaacataatcctcctccttcatctggggatcgtgatatagacatcactggccagtcctatatccagtaataacaacatatatgtaaaatac |
53830172 |
T |
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| Q |
113 |
ttagcctaattagtataattaggacgttattttcttatcttaaaatatatatta----ggacgttcatcttttaatttaaggggtcttttttgtttctgt |
208 |
Q |
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| T |
53830173 |
ttagcctaattagtataattaggacgttattttctgatcttaaaatatatattaattaggacgttcatcttttaatttaaggggtcttttttgtttctgt |
53830272 |
T |
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| Q |
209 |
tgtcattggtggctgtattttcttttaataagttttcttccatcatttccctcatgtataaactttggtgatccacttcgtaatgttaatgagcg |
303 |
Q |
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| T |
53830273 |
tgtcattggtggctgtattttcttttaataagttttcttccatcatttccctcatgtataaactgtggtgatccacttcgtaatgttaatgagcg |
53830367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 374 - 515
Target Start/End: Original strand, 53830367 - 53830507
Alignment:
| Q |
374 |
gtgtaaggatcaaatggaatggtaatttatttattttggtttgaaaatcgaatggtaatttaaacttttgcctaacttcaatgtttaattatgattattt |
473 |
Q |
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| T |
53830367 |
gtgtaaggatcaaatggaatggtaatttatttattttggtttgaaaatcgaatggtaatttaaacttttgcctaacttcaatgtttaattatgattattt |
53830466 |
T |
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| Q |
474 |
tgttaaaagtgtatcaaataattagtgtttgtttatgtcatt |
515 |
Q |
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| T |
53830467 |
tgtt-aaagtgtatcaaataattagtgtttgtttatgtcatt |
53830507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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