View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20030_low_10 (Length: 232)
Name: NF20030_low_10
Description: NF20030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20030_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 32965492 - 32965710
Alignment:
| Q |
1 |
aagtcaggaccaaattcaaggaaccatttttccctgatgatcctatgcgacaattcaagggacaaccatgtaacagaaaattaatccttggagctcaata |
100 |
Q |
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| T |
32965492 |
aagtcaggaccaaattcaaggaaacatttttccctgatgatcctatgcgacaattcaagggacaaccatgtaacagaaaattaatccttggagctcaata |
32965591 |
T |
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| Q |
101 |
nnnnnnncctattcttcagtggttacctaattacaatttcaaactccttaaagctgaccttatatctggcctcaccattgctagcttggccatccctcag |
200 |
Q |
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| T |
32965592 |
tttttttcctattcttcagtggttacctaattacaatttcaaactccttaaagctgaccttatatctggcctcaccattgctagcttggccatccctcag |
32965691 |
T |
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| Q |
201 |
gttaacttgtttaataatt |
219 |
Q |
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||||||||||||||||||| |
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| T |
32965692 |
gttaacttgtttaataatt |
32965710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 32954377 - 32954442
Alignment:
| Q |
138 |
ttcaaactccttaaagctgaccttatatctggcctcaccattgctagcttggccatccctcaggtt |
203 |
Q |
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||||||||| ||||| |||||||| | ||||| ||||| ||||||||||| |||||||| |||||| |
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| T |
32954377 |
ttcaaactctttaaatctgaccttgtttctggtctcactattgctagcttagccatcccacaggtt |
32954442 |
T |
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