View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20030_low_3 (Length: 443)
Name: NF20030_low_3
Description: NF20030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20030_low_3 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0667 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 29443134 - 29443576
Alignment:
| Q |
1 |
gctcgaagaacaatgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29443134 |
gctcgaagaacaatgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacc |
29443233 |
T |
|
| Q |
101 |
taacactcgagattttcaatgaggttccttttcctgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29443234 |
taacactcgagattttcaatgaggttccttttcctgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtct |
29443333 |
T |
|
| Q |
201 |
ttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29443334 |
ttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaa |
29443433 |
T |
|
| Q |
301 |
tcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29443434 |
tcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggt |
29443533 |
T |
|
| Q |
401 |
atgatctcaagagtgaatgtgttagttatgttgaaggaattcc |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29443534 |
atgatctcaagagtgaatgtgttagttatgttgaaggaattcc |
29443576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 443
Target Start/End: Original strand, 29453131 - 29453559
Alignment:
| Q |
15 |
gggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgagatt |
114 |
Q |
| |
|
||||| ||||||||||||||| ||||||||| |||||||||||||||||| || ||||||| |||||| |||||| |||||||||||||||| ||||||| |
|
|
| T |
29453131 |
gggggtttttgttgagaattctcttcactggataatgactcggaaacttggtcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagatt |
29453230 |
T |
|
| Q |
115 |
ttcaatgaggttccttttcctgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtctttgtatgattgtga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
29453231 |
ttcaatgaggttccttttcctgaaataggtgaagaagtgaatagtgagagttttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtga |
29453330 |
T |
|
| Q |
215 |
attatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagttt |
314 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||| ||| |
|
|
| T |
29453331 |
attatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtgaactttttactttggcggaatcatgtttcatttt |
29453430 |
T |
|
| Q |
315 |
acctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagt |
414 |
Q |
| |
|
|||||||| | ||||| || ||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29453431 |
acctttgaaaactttgtggcctttagcttattcgagcgatggaagtatggttctgttggaagtagattgtgagaagctgttttggtatgatctcaagagt |
29453530 |
T |
|
| Q |
415 |
gaatgtgttagttatgttgaaggaattcc |
443 |
Q |
| |
|
||| ||||||| ||||||||||||||| |
|
|
| T |
29453531 |
gaacaagttagttgtgttgaaggaattcc |
29453559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 443
Target Start/End: Complemental strand, 29423586 - 29423152
Alignment:
| Q |
9 |
aacaatgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactc |
108 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||| |||| ||||||||| |||||| |||||||||||||||| |
|
|
| T |
29423586 |
aacaatgggggtttttgttgagaattctcttcactggataatgacggagaaacttgatccgttgaaacctcgtgtaattgttgcgtttaacctaacacat |
29423487 |
T |
|
| Q |
109 |
gagattttcaatgaggttccttttcctgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtctttgtatga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |||||||| || |||||||||||||||| |||||||||| |
|
|
| T |
29423486 |
gagattttcaatgaggttccttttcctgaaattggtgaagaagtgaatagtgagagttttgaaattggtgttgcggttctggaagggtgcctttgtatga |
29423387 |
T |
|
| Q |
209 |
ttgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgttt |
308 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29423386 |
ctgtgaattatcaaactgttaaaattgatgtttggctgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgttt |
29423287 |
T |
|
| Q |
309 |
cagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctc |
408 |
Q |
| |
|
|| |||||||||| |||||||||| |||||| ||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29423286 |
caccttacctttgaaagctttgaggcttttagcttattcgagcgatggaggtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctc |
29423187 |
T |
|
| Q |
409 |
aagagtgaatgtgttagttatgttgaaggaattcc |
443 |
Q |
| |
|
||||||||| ||||||| |||| |||||||||| |
|
|
| T |
29423186 |
aagagtgaacaagttagttgtgttcaaggaattcc |
29423152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 21 - 443
Target Start/End: Original strand, 29467613 - 29468035
Alignment:
| Q |
21 |
ttttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgagattttcaat |
120 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||| |||||||||| ||| ||| || || |||| ||||||||||||||| || |||||||||||| |
|
|
| T |
29467613 |
ttttgttgagaattctcttcattggataatgaagaagaaacttgatgggttacaatcttgtttaattatcgcgtttaacctaaagcttgagattttcaat |
29467712 |
T |
|
| Q |
121 |
gaggttccttttcctgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtctttgtatgattgtgaattatc |
220 |
Q |
| |
|
||||||||| |||||||||||||| | || |||||| |||||||||| |||||| | || ||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
29467713 |
gaggttcctcttcctgaaataggttatgaagttaatgttgagagttttaaaattgatgttgcggttttgggagggtgtctttagttgattgtgaattatc |
29467812 |
T |
|
| Q |
221 |
aaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttaccttt |
320 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| | ||||||||||| ||||| || |
|
|
| T |
29467813 |
aaactagtaaaattgatgtttggttgatgaaagaatatggatgtagagatagttggcgtaaactttttactttggttagatcgtgtttcactttacagtt |
29467912 |
T |
|
| Q |
321 |
gagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgt |
420 |
Q |
| |
|
| | |||||||| ||||||||||||||||||| |||||||||||||||| ||||||| | ||||||| |||||||||||||||||||||||||| | |
|
|
| T |
29467913 |
ggaatctttgaggcctttaggttattcgagcgatggaagtatggttctgtttgaagtagaccatgagaagttgttttggtatgatctcaagagtgaacat |
29468012 |
T |
|
| Q |
421 |
gttagttatgttgaaggaattcc |
443 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
29468013 |
gttaattatgttgaaggaattcc |
29468035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 8e-65; HSPs: 37)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 9 - 442
Target Start/End: Complemental strand, 10353439 - 10352997
Alignment:
| Q |
9 |
aacaatgggggattttgttgagaattcc------cttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaaccta |
102 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||| ||| ||||| || | ||||| |||||| | |||| |||||||||||||| |
|
|
| T |
10353439 |
aacaatgggggtttttgttgagaattctagttctcttcactgggtagcgacgaggaaagttcaactgtttcaacctgatttaattctcgcgtttaaccta |
10353340 |
T |
|
| Q |
103 |
acactcgagattttcaatgaggttccttttcctga---aataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtc |
199 |
Q |
| |
|
||||| |||| |||||||||||||||| ||||||| ||||| ||||| ||||||||| |||||||| ||||| || || | | | | | |||||||| |
|
|
| T |
10353339 |
acacttgagactttcaatgaggttcctcttcctgatgaaatagaggaagaagttaatagtaagagttttaaaattcgtgttgctgctttaggagggtgtc |
10353240 |
T |
|
| Q |
200 |
tttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctga |
299 |
Q |
| |
|
|||||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||| | | |
|
|
| T |
10353239 |
tttgtatgattgtggattataaagatactaaaattgatgtttgggtgatgaaagaatatggatgtagagagagttggtgtaaactttttactgtggttaa |
10353140 |
T |
|
| Q |
300 |
atcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttgg |
399 |
Q |
| |
|
||| | |||| |||||||||| | |||||||| |||||||||||||||| ||||||| | |||| ||||| |||||| |||||| || |||||| |
|
|
| T |
10353139 |
atcttctttcgatttacctttgcaatctttgaggcttttaggttattcgagtgatagaaaaaaggttttgttgagggtagatgttgagaatctattttgg |
10353040 |
T |
|
| Q |
400 |
tatgatctcaagagtgaatgtgttagttatgttgaaggaattc |
442 |
Q |
| |
|
|||||| | ||||| || |||||||||||| ||| ||||| |
|
|
| T |
10353039 |
tatgatttggagagtaaacaagttagttatgttcaagaaattc |
10352997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 21 - 443
Target Start/End: Complemental strand, 10336147 - 10335743
Alignment:
| Q |
21 |
ttttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgagattttcaat |
120 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||| |||||||||| ||| |||||| || ||||| |||||||| ||| |||| |||||||||||| |
|
|
| T |
10336147 |
ttttgttgagaattctcttcactggataatgactccgaaacttgatgggttacaaccttgtttaattgctgcgtttaatctatcacttgagattttcaat |
10336048 |
T |
|
| Q |
121 |
gaggttccttttcctgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtctttgtatgattgtgaattatc |
220 |
Q |
| |
|
||||||||| ||||||| |||| ||| || |||||||||| ||||| |||| | ||| ||| ||||||||||||| || ||||||||||| |
|
|
| T |
10336047 |
gaggttcctcttcctga------tgaaataattagtaatgagagttttaaaatttctattgctgttttgggagggtgtctttgtttgcctgtgaattatc |
10335954 |
T |
|
| Q |
221 |
aaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttaccttt |
320 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| | |||||||||| ||| |
|
|
| T |
10335953 |
aaactactaaaattgatgtttgggtgatgaaagaatatggctgtagagatagttggtgtaaacattttactttggttaaatcgtgtttagattt------ |
10335860 |
T |
|
| Q |
321 |
gagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgt |
420 |
Q |
| |
|
||||||| ||||||||||| || ||| |||||| |||||| ||| || | ||| || ||||| |||||||||||||| | ||||||||| |
|
|
| T |
10335859 |
------tttgaggcctttaggttattgtagtgatggaagtaaggttctattggaaatcgattgtaagaagttgttttggtatgatttgaagagtgaacaa |
10335766 |
T |
|
| Q |
421 |
gttagttatgttgaaggaattcc |
443 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10335765 |
attagttatgttgaaggaattcc |
10335743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 10348104 - 10347793
Alignment:
| Q |
14 |
tgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgagat |
113 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| | ||||| |||||||||| ||| || ||| | |||||||||||||||||| ||||| || || |
|
|
| T |
10348104 |
tgggggtttttgttgagaattctattcactggattatgacgaagaaacttgatgggttacatccttctttaattgtcgcgtttaacctcacacttgaaat |
10348005 |
T |
|
| Q |
114 |
tttcaatgaggttccttttcctga---aataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtctttgtatgatt |
210 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||| |||||| ||||||||||| || || | || | ||| ||| ||||||||||||||| | | |
|
|
| T |
10348004 |
tttcaatgaggttcctcttcctgatgaaataggtgaagaagttaatggtgagagttttgaagttcatgttgctgttttgggagggtgtctttgtatcact |
10347905 |
T |
|
| Q |
211 |
gtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttca |
310 |
Q |
| |
|
|| ||||| || | ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
10347904 |
gtcgattataaagatactaaaattgatgtttgggtcatgaaagaatatggatgtagagatagttggtgtaaactttttactatggctgagtcgtgtttcg |
10347805 |
T |
|
| Q |
311 |
gtttacctttga |
322 |
Q |
| |
|
||||||||||| |
|
|
| T |
10347804 |
atttacctttga |
10347793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 91 - 417
Target Start/End: Complemental strand, 9364870 - 9364541
Alignment:
| Q |
91 |
gcgtttaacctaacactcgagattttcaatgaggttccttttcctgaaataggtgaagatgttaat---agtgagagttttcaaattggtatttcggttc |
187 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||| | |||| |||||||||||| |||| | | || ||||| |
|
|
| T |
9364870 |
gcgtttaacttaacactagagattttcaatgaagttccacttcctgaaataggtgaagttaataatgagagtgagagttttgaaatcgatgttgcggttt |
9364771 |
T |
|
| Q |
188 |
tggaagggtgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttt |
287 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | |||||| ||||||||| | || |
|
|
| T |
9364770 |
tgggagggtgtcttagtatgattgtgaattatcaaactactcaaattgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtt |
9364671 |
T |
|
| Q |
288 |
tactttgg-ctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtga |
386 |
Q |
| |
|
|||||||| || || | |||| | |||||||| | | |||||| ||||||||||||||| ||| ||| | |||| | ||| || |||||||| | |
|
|
| T |
9364670 |
tactttggtgggactcttttttccg-acacctttgaaatcgttgaggcctttaggttattcgagtgatggaaagaaggttttattggaaatagatcgtaa |
9364572 |
T |
|
| Q |
387 |
gaagctgttttggtatgatctcaagagtgaa |
417 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |
|
|
| T |
9364571 |
gaagctgttttggtacgatctcaagagtgaa |
9364541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 15 - 443
Target Start/End: Complemental strand, 9328908 - 9328486
Alignment:
| Q |
15 |
gggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgagatt |
114 |
Q |
| |
|
||||| ||| ||||||||||| ||||||||| |||||||| |||||||| | || || ||| | |||||| ||||||||||||||||| || ||| |
|
|
| T |
9328908 |
gggggttttggttgagaattctcttcactggataatgactaagaaacttggtggattacatccttctttaattgttgcgtttaacctaacacttgaaatt |
9328809 |
T |
|
| Q |
115 |
ttcaatgaggttccttttcctgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtctttgtatgattgtga |
214 |
Q |
| |
|
||||||| ||||||| ||||||| || ||| || || | |||||||| |||||| | || ||| ||| |||||||||||| |||| | ||| |
|
|
| T |
9328808 |
ttcaatgtggttcctcttcctga------tgttgataatagtaataagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactttga |
9328715 |
T |
|
| Q |
215 |
attatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagttt |
314 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| ||| | ||||||||||| ||| |
|
|
| T |
9328714 |
attatgaaactactgaaattgatgtttgggtgatgaaacaatatggatatagagatagttggtgtaaactttttactatggttaaatcgtgtttccattt |
9328615 |
T |
|
| Q |
315 |
acctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagt |
414 |
Q |
| |
|
|||||||| | |||||||| ||||||||||| ||| ||| ||| | |||| ||||| || ||| |||||||||||||| ||||||| | | |||| |
|
|
| T |
9328614 |
acctttgaaatctttgaggcctttaggttatttgagtgatggaaaaaaggttttgttgagggtggattttgagaagctgtttttgtatgattttaggagt |
9328515 |
T |
|
| Q |
415 |
gaatgtgttagttatgttgaaggaattcc |
443 |
Q |
| |
|
| | ||||||||||||||||||||||| |
|
|
| T |
9328514 |
gcacaagttagttatgttgaaggaattcc |
9328486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 196 - 443
Target Start/End: Original strand, 9284198 - 9284445
Alignment:
| Q |
196 |
tgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttgg |
295 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| | ||||||||| ||||||||| |||||||||||| |
|
|
| T |
9284198 |
tgtcttagtatgattgtgaattatcaaactactaaaattgacgtttgggtgatgaaagaatatggttctagagatagttggtgtaaaatttttactttgg |
9284297 |
T |
|
| Q |
296 |
ctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgagaagctgtt |
395 |
Q |
| |
|
| |||| | |||| ||||| ||||| | |||||||| |||||||||||| || ||| | |||| |||||| || || ||||| || |||||||| | |
|
|
| T |
9284298 |
ttaaatcacggttcactttacgtttgaaatctttgaggcctttaggttattctagtgatggtagtaaggttctattagaaatagattgtaagaagctggt |
9284397 |
T |
|
| Q |
396 |
ttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcc |
443 |
Q |
| |
|
|||||||||| | |||||||| |||| |||||||||||||||||| |
|
|
| T |
9284398 |
ttggtatgatttgaagagtgagcaagttatttatgttgaaggaattcc |
9284445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 13 - 441
Target Start/End: Complemental strand, 9316342 - 9315908
Alignment:
| Q |
13 |
atgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgaga |
112 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||||||||||||| | || ||| || || ||| || ||||||||||||||||||||||| |||| |
|
|
| T |
9316342 |
atgggggtttttgttcagaattctcttcactgggtaatgactcagcaaagtgaagagtcacacccttgtttcattgtcgcgtttaacctaacacttgaga |
9316243 |
T |
|
| Q |
113 |
ttttcaatgaggttccttttcctg---aaatag---gtgaagatgttaatagtgag------agttttcaaattggtatttcggttctggaagggtgtct |
200 |
Q |
| |
|
||||||||| ||||||| |||||| |||||| || ||| |||||||||||| ||||||||||||| | || | ||| ||| ||||||||| |
|
|
| T |
9316242 |
ttttcaatgtggttcctcttcctgctgaaatagaaagtatagaggttaatagtgagtgtgagagttttcaaattgctgttgctgttttgggagggtgtct |
9316143 |
T |
|
| Q |
201 |
ttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaa |
300 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| ||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| | | |
|
|
| T |
9316142 |
ttgtatgattttgaattatcaaactactaaaactgatgtttgggtgatgaaagactatggat------ctagttggtgtaaactttttactttggttaat |
9316049 |
T |
|
| Q |
301 |
tcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggt |
400 |
Q |
| |
|
|| ||||||| |||| |||||| ||||| | |||||||||||| || || |||||| |||||| ||| || ||||| || ||||||||||||||| |
|
|
| T |
9316048 |
tcatgtttcactttatctttgaattttttgaagcctttaggttattctagtgacggaagtaaggttctattggaaatagattgtaagaagctgttttggt |
9315949 |
T |
|
| Q |
401 |
atgatctcaagagtgaatgtgttagttatgttgaaggaatt |
441 |
Q |
| |
|
||| | | ||||||| |||| |||||||||||||||| |
|
|
| T |
9315948 |
gtgacttgatgagtgaacaagttatttatgttgaaggaatt |
9315908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 13 - 443
Target Start/End: Complemental strand, 9321290 - 9320869
Alignment:
| Q |
13 |
atgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgaga |
112 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| ||||||| |||||||| | || || ||| | |||||| || |||||||||||||| || | |
|
|
| T |
9321290 |
atgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaa |
9321191 |
T |
|
| Q |
113 |
ttttcaatgaggttccttttcctgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtctttgtatgattgt |
212 |
Q |
| |
|
||||||||| ||||||| ||||||| || || || || |||||||||| |||||| | || ||| ||| |||||||||||| |||| | |
|
|
| T |
9321190 |
ttttcaatgtggttcctcttcctga------tgttcataatagtaatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt- |
9321098 |
T |
|
| Q |
213 |
gaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagt |
312 |
Q |
| |
|
|||| ||||| | ||| |||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||| | ||||||||| | | |
|
|
| T |
9321097 |
--attacgaaactacaaaagttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactatggttaaatcgtgttacgat |
9321000 |
T |
|
| Q |
313 |
ttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaaga |
412 |
Q |
| |
|
|||||||||| | |||||||| ||||||||||||||| ||| ||| | |||| ||||| |||||| |||||||||||||||||||||| | |||| |
|
|
| T |
9320999 |
ttacctttgaaatctttgaggcctttaggttattcgagtgatggaaaaaaggttttgttgagggtagatgctgagaagctgttttggtatgatttgaaga |
9320900 |
T |
|
| Q |
413 |
gtgaatgtgttagttatgttgaaggaattcc |
443 |
Q |
| |
|
||| | ||||||||||||||||||||||| |
|
|
| T |
9320899 |
gtgcacaagttagttatgttgaaggaattcc |
9320869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 9065408 - 9065777
Alignment:
| Q |
13 |
atgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgaga |
112 |
Q |
| |
|
||||||| ||||||||||||||| |||||| | ||||||| |||||| |||| ||| || ||| | |||||| || |||||||| ||||| || | |
|
|
| T |
9065408 |
atgggggtttttgttgagaattctattcacttgataatgacgaagaaactagatcggttacatccttctttaattgttgcatttaacctcacacttgaaa |
9065507 |
T |
|
| Q |
113 |
ttttcaat-gaggttccttttcctg---aaata---ggtgaagatgttaatagt---gagagttttcaaattggtatttcggttctggaagggtgtcttt |
202 |
Q |
| |
|
|||||||| |||||||| |||||| ||||| |||||||| ||||||||| |||||||||||||| | || | ||| ||| ||||||||||| |
|
|
| T |
9065508 |
ttttcaattgaggttccccttcctgctgaaataagaggtgaagaggttaatagtaatgagagttttcaaatgactgttgctgttttgggagggtgtcttt |
9065607 |
T |
|
| Q |
203 |
gtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatc |
302 |
Q |
| |
|
|||||||| |||||||| ||||| |||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
9065608 |
gtatgattttgaattatgaaactactaatattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatc |
9065707 |
T |
|
| Q |
303 |
gtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttg |
372 |
Q |
| |
|
|||||| || || ||||| ||||| |||| | |||||||||| | ||| |||||| |||||||||| |
|
|
| T |
9065708 |
ttgtttccattcacatttgacagcttcgaggcctctaggttattccggtgatggaagtaaggttctgttg |
9065777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 84 - 321
Target Start/End: Complemental strand, 10372107 - 10371867
Alignment:
| Q |
84 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctga---aataggtgaagatgttaatagtgagagttttcaaattggtatt |
180 |
Q |
| |
|
|||| |||||||||||||| |||| |||| |||||||||||||||| | ||||| | |||||||||| ||||||||| | |||||| ||||| || || |
|
|
| T |
10372107 |
aattctcgcgtttaacctatcacttgagactttcaatgaggttcctctccctgatgaactaggtgaagaagttaatagtaatagttttgaaattcgtgtt |
10372008 |
T |
|
| Q |
181 |
tcggttctggaagggtgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgta |
280 |
Q |
| |
|
| ||| | | ||||||||||||||||| |||| ||||| ||||| |||| ||||| |||||||||||||||||||||| | ||||||||| ||||||| |
|
|
| T |
10372007 |
gctgttttaggagggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggtgta |
10371908 |
T |
|
| Q |
281 |
aactttttactttggctgaatcgtgtttcagtttacctttg |
321 |
Q |
| |
|
||||||||||||||| | |||| |||| ||||||||||| |
|
|
| T |
10371907 |
aactttttactttggttaaatcaagtttgggtttacctttg |
10371867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 84 - 322
Target Start/End: Original strand, 12012433 - 12012680
Alignment:
| Q |
84 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctga---aata---ggtgaagatgttaatagtgagagt---tttcaaatt |
174 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||| |||||||| |||| |||||||| |||| | || | ||| ||| ||||| |
|
|
| T |
12012433 |
aattgtcgcgtttaacctaacacttgagcttttcaatgaggttccatttcctgatgaaatatgaggtgaagaggttatttgtaatagtagttttgaaatt |
12012532 |
T |
|
| Q |
175 |
ggtatttcggttctggaagggtgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagct |
274 |
Q |
| |
|
| || | | | ||| ||||||||||||||||||||||||| |||||||| |||| |||||||| | |||||||||||||||||| |||| |||||| | |
|
|
| T |
12012533 |
tctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagtt |
12012632 |
T |
|
| Q |
275 |
ggtgtaaactttttactttggctgaatcgtgtttcagtttacctttga |
322 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
12012633 |
ggtgtaaactttttactttggtggaatcgtgtttcgttttacctttga |
12012680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 84 - 443
Target Start/End: Original strand, 11987374 - 11987742
Alignment:
| Q |
84 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcct---gaaatagg------tgaagatgtta---atagtgagagttttcaa |
171 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |||| |||||| |||||| || |
|
|
| T |
11987374 |
aattgtcgcatttaacctaacactcgaggttttcaatgaggttccttttcctcatgaaataggaggaggtgaagaggttactaatagtgcaagttttgaa |
11987473 |
T |
|
| Q |
172 |
attggtatttcggttctggaagggtgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagata |
271 |
Q |
| |
|
|||| | || | ||| ||| ||||||||||||| ||| ||||||| |||| ||| || |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11987474 |
attgatgttgctgttttgggagggtgtctttgtttgactgtgaatcatcatact---aagattgatatttgggtgatgaaagaatatggatgtagagata |
11987570 |
T |
|
| Q |
272 |
gctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgtt |
371 |
Q |
| |
|
| |||||||||||||| || ||| |||||||||||| ||||||||||| | ||||||| ||| ||||||||||| ||| | | | |||| |||| |
|
|
| T |
11987571 |
gttggtgtaaacttttcacattgatggaatcgtgtttcgttttacctttgaaatctttgagccctttgggttattcgagtgatggtaaaaaggttttgtt |
11987670 |
T |
|
| Q |
372 |
gcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcc |
443 |
Q |
| |
|
| | | ||| |||||||| ||||||||||| | ||||||||| ||||||||||||| |||||||| |
|
|
| T |
11987671 |
ggatcttaatcacaagaagctggtttggtatgatttgaagagtgaacaatttagttatgttgacggaattcc |
11987742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 21 - 294
Target Start/End: Complemental strand, 9274821 - 9274557
Alignment:
| Q |
21 |
ttttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgagattttcaat |
120 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| || || ||||| || || ||| || |||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
9274821 |
ttttgttgagaattctcttcactgggtaatgactagggaaattgatgagtcacacccttgtttaattgttgcgtttaacctaacacttgatattttcaat |
9274722 |
T |
|
| Q |
121 |
gaggttccttttcctgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtctttgtatgattgtgaattatc |
220 |
Q |
| |
|
| ||||||| |||||||| || || ||||||||||||||| ||||| | || ||| ||||||||||||||||||||| | ||||||||| |
|
|
| T |
9274721 |
gtggttcctcttcctgaa---------gaagtcaatagtgagagttttgaaattaatgttgttgttttggaagggtgtctttgtatgactttgaattatc |
9274631 |
T |
|
| Q |
221 |
aaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttg |
294 |
Q |
| |
|
|| | || || |||| ||||||||||||||||||||||| | || |||||| ||||||||||||||||||||| |
|
|
| T |
9274630 |
gaaatactgaatttgaagtttgggtgatgaaagaatatggttctacagatagttggtgtaaactttttactttg |
9274557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 84 - 331
Target Start/End: Original strand, 12006005 - 12006261
Alignment:
| Q |
84 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctga------aataggtgaagatgttaatagtga---gagttttcaaatt |
174 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||| || ||||||||| |||| | || | ||||||| ||||| |
|
|
| T |
12006005 |
aattttcgcgtttaacctaacacttgaggttttcaacgaggttccttttcctgatgaaataagaggtgaagaggttatttgtaatcggagttttgaaatt |
12006104 |
T |
|
| Q |
175 |
ggtatttcggttctggaagggtgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagct |
274 |
Q |
| |
|
| || | | | ||| ||||||||||||| |||||||||||||||||||| |||| |||||||| |||||||||||||||||||| |||| |||||| | |
|
|
| T |
12006105 |
aatgttgctgatttgggagggtgtctttgtttgattgtgaattatcaaactactaagattgatgtatgggtgatgaaagaatatggttgtaaagatagtt |
12006204 |
T |
|
| Q |
275 |
ggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttga |
331 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| ||||||| ||| | |||||| |
|
|
| T |
12006205 |
ggtgtaaactttttactttgatgggatcgtgtttcgttttacctgtgatatctttga |
12006261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 84 - 443
Target Start/End: Original strand, 12018769 - 12019143
Alignment:
| Q |
84 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctg---aaataggtg---aagatgttaatagtgag----agttttcaaat |
173 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||||||||||||| ||||| ||||||| | || | |||||||| ||| ||||||||||| |
|
|
| T |
12018769 |
aattgtcgcatttaacctcacactcgatattttcaatgaggttcctcttcctactaaaataggaggtaaaaaggttaatag-gagtataagttttcaaat |
12018867 |
T |
|
| Q |
174 |
tggtatttcggttctggaagggtgtctttgtatgattgtgaattatc------aaactgctaaaattgatgtttgggtgatgaaagaatatggatgtaga |
267 |
Q |
| |
|
|| | || | | | ||| ||||||||||||| ||||| ||||||||| ||| | |||| || | ||||||||||||||||||||||||||||||| |
|
|
| T |
12018868 |
tgctgttgctgatttgggagggtgtctttgtttgattatgaattatcgaaatcaaattactaagataggtgtttgggtgatgaaagaatatggatgtaga |
12018967 |
T |
|
| Q |
268 |
gatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttc |
367 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||| ||||||||| ||| |||||| ||||||||||||||| ||| ||| | |||| |
|
|
| T |
12018968 |
gatagttggtgtaaactttttactttgatggaatcgtgtttcgttttaccttttagatttttgagccctttaggttattcgagtgatggaaaaaaggttt |
12019067 |
T |
|
| Q |
368 |
tgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcc |
443 |
Q |
| |
|
||||| | ||| ||| | | | |||| ||||||||||| | |||||| | ||||||||||||||||||||||| |
|
|
| T |
12019068 |
tgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagttagttatgttgaaggaattcc |
12019143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 192 - 443
Target Start/End: Original strand, 7115646 - 7115900
Alignment:
| Q |
192 |
agggtgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttact |
291 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
7115646 |
agggtgtctttgtatgattgtgaattatagaactactaaaacagatgtttgggtgatgaaacaatatggatctagagacagctggtgtaaactttttaca |
7115745 |
T |
|
| Q |
292 |
ttggctgaatcgtgtttcagtttacctttg---agagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgaga |
388 |
Q |
| |
|
|||| | | ||||||||| |||| ||||| | | || ||| |||||||||||| || ||| |||| | |||||| ||| || ||||| || || |
|
|
| T |
7115746 |
ttggttaattcgtgtttcgatttatctttgattacatggttcaggcctttaggttattctagtgatggaagcaaggttctattggaaatagattgtagga |
7115845 |
T |
|
| Q |
389 |
agctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcc |
443 |
Q |
| |
|
||||| ||||||||||| | ||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
7115846 |
agctggtttggtatgatttgaagagcgaacaagttagttgtgttgaaggaattcc |
7115900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 193 - 321
Target Start/End: Original strand, 9061146 - 9061274
Alignment:
| Q |
193 |
gggtgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactt |
292 |
Q |
| |
|
||||||||||| ||| |||||||||| || || |||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
9061146 |
gggtgtctttgcatgtctgtgaattatgaagctactaaaattgatgtttgggtgatgaaagactatggatctagagatagttggtgtaaactttttactt |
9061245 |
T |
|
| Q |
293 |
tggctgaatcgtgtttcagtttacctttg |
321 |
Q |
| |
|
||| | |||||||||||| || ||||||| |
|
|
| T |
9061246 |
tggttaaatcgtgtttcaattcacctttg |
9061274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 193 - 372
Target Start/End: Original strand, 8573510 - 8573689
Alignment:
| Q |
193 |
gggtgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactt |
292 |
Q |
| |
|
||||||||||||||| |||||||||| |||| || ||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||| |
|
|
| T |
8573510 |
gggtgtctttgtatgtctgtgaattatgaaaccactgaaattgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactt |
8573609 |
T |
|
| Q |
293 |
tggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttg |
372 |
Q |
| |
|
| | | |||||||||||| | || ||| | | ||| |||| |||||||||||| || ||| |||||| |||||||||| |
|
|
| T |
8573610 |
tcgttaaatcgtgtttcactccacattttaaatcttcgaggcctttaggttattctagtgatggaagtaaggttctgttg |
8573689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 195 - 372
Target Start/End: Complemental strand, 9292072 - 9291901
Alignment:
| Q |
195 |
gtgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttg |
294 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
9292072 |
gtgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggttctagagatagttggtgtaaactttttactttg |
9291973 |
T |
|
| Q |
295 |
gctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttg |
372 |
Q |
| |
|
| | ||||| | |||| |||||| | |||||||| |||| ||||||| || ||| |||||| |||||||||| |
|
|
| T |
9291972 |
gttaaatcgcggttca------ctttgaaatctttgaggcctttatgttattctagggatggaagtaaggttctgttg |
9291901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 196 - 310
Target Start/End: Complemental strand, 16269223 - 16269109
Alignment:
| Q |
196 |
tgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttgg |
295 |
Q |
| |
|
||||||||||| | |||||||||| ||||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||| |||| |
|
|
| T |
16269223 |
tgtctttgtataactgtgaattatgaaactactaaaattgatgtttgggtgatgaaagagtatggatatagagatagttggtgcaaactttttaccttgg |
16269124 |
T |
|
| Q |
296 |
ctgaatcgtgtttca |
310 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
16269123 |
ttaaatcgtgtttca |
16269109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 17566107 - 17566217
Alignment:
| Q |
212 |
tgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcag |
311 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||| ||||||||||||| |||||||| ||||||||| | ||||| |||| || | | ||||||| |
|
|
| T |
17566107 |
tgaattatcaaactactaatgttgatgtttgggtgattaaagaatatggatttagagataattggtgtaaattgtttaccttgggcgagtggcgtttcag |
17566206 |
T |
|
| Q |
312 |
tttacctttga |
322 |
Q |
| |
|
| ||||||||| |
|
|
| T |
17566207 |
tatacctttga |
17566217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 233 - 378
Target Start/End: Original strand, 8579532 - 8579677
Alignment:
| Q |
233 |
ttgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgag |
332 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| ||||||||| ||||||||| | |||||||| | || ||||| |||| | |||||||||| |||||| |
|
|
| T |
8579532 |
ttgaggtttgggtgatgaaaaaatatggatttagagatagttggtgtaaattgtttacttttgaggattcgtgcttcaataaacctttgagatctttgaa |
8579631 |
T |
|
| Q |
333 |
gattttaggttattcgagcgatagaagtatggttctgttgcaagta |
378 |
Q |
| |
|
| ||| ||||||| || |||||||||| ||||||||| ||||| |
|
|
| T |
8579632 |
gcctttgtgttattctagtgatagaagtaaagttctgttggaagta |
8579677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 387 - 443
Target Start/End: Original strand, 9061358 - 9061414
Alignment:
| Q |
387 |
gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcc |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9061358 |
gaagctgttttggtatgatctcaagagtgaacaagttagttatgttgaaggaattcc |
9061414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 7115480 - 7115579
Alignment:
| Q |
38 |
ttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctga |
137 |
Q |
| |
|
|||||||| ||||| |||||||||||||| || || ||| || |||||||||||||||||||||||| ||| ||||| |||||||||| ||||||| |
|
|
| T |
7115480 |
ttcactggataatgtctcggaaacttgatgagtcacacccttgtttaattgtcgcgtttaacctaacacttgagcgtttcattgaggttcctcttcctga |
7115579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 7612057 - 7611974
Alignment:
| Q |
212 |
tgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttgg |
295 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||||||||||||||||||| | |||||| ||||||||| | |||||||||| |
|
|
| T |
7612057 |
tgaattatgaaactattaagtttgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtttactttgg |
7611974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 9292245 - 9292122
Alignment:
| Q |
13 |
atgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgaga |
112 |
Q |
| |
|
||||||| ||||||| ||||||| | ||||||||||||||||||| | ||| | || || ||| || |||||||| |||||||||||||| |||| |
|
|
| T |
9292245 |
atgggggtttttgttcagaattctatccactgggtaatgactcggacaattgttgagtcacacccttgtttcattgtcgcttttaacctaacacttgaga |
9292146 |
T |
|
| Q |
113 |
ttttcaatgaggttccttttcctg |
136 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
9292145 |
ctttcaatgtggttccttttcctg |
9292122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 443
Target Start/End: Complemental strand, 16269012 - 16268955
Alignment:
| Q |
386 |
agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcc |
443 |
Q |
| |
|
||||| |||||||||||||| | ||||||||| | ||||||||||||||||||||||| |
|
|
| T |
16269012 |
agaagttgttttggtatgatttgaagagtgaacgagttagttatgttgaaggaattcc |
16268955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 9284077 - 9284129
Alignment:
| Q |
84 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctg |
136 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| ||||||||| |||||| |
|
|
| T |
9284077 |
aattgtcgcgtttaacctaacactagaggttttcaaagaggttcctcttcctg |
9284129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 16269325 - 16269277
Alignment:
| Q |
88 |
gtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctg |
136 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||| |||||| |
|
|
| T |
16269325 |
gtcgcgtttaacctaacacttgagattttcaacgaggttcctcttcctg |
16269277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 443
Target Start/End: Original strand, 8573725 - 8573781
Alignment:
| Q |
387 |
gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcc |
443 |
Q |
| |
|
||||||||||||||||||| | ||||||||| || |||||||||||||||||||| |
|
|
| T |
8573725 |
gaagctgttttggtatgatttgaagagtgaacaagtcagttatgttgaaggaattcc |
8573781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 9291865 - 9291809
Alignment:
| Q |
387 |
gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcc |
443 |
Q |
| |
|
||||||||||||||||||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
9291865 |
gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcc |
9291809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 10347707 - 10347651
Alignment:
| Q |
387 |
gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcc |
443 |
Q |
| |
|
||||||||||||||||||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
10347707 |
gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcc |
10347651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 10371780 - 10371728
Alignment:
| Q |
387 |
gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaa |
439 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||||||||||||||||| |
|
|
| T |
10371780 |
gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaa |
10371728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 9061022 - 9061072
Alignment:
| Q |
84 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcc |
134 |
Q |
| |
|
||||||||| |||||||| ||||| || |||||||||||||||||| |||| |
|
|
| T |
9061022 |
aattgtcgcatttaacctcacacttgaaattttcaatgaggttcctcttcc |
9061072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 443
Target Start/End: Original strand, 8579703 - 8579760
Alignment:
| Q |
386 |
agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcc |
443 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| || |||| |||||||||| |
|
|
| T |
8579703 |
agaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcc |
8579760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 17565967 - 17566024
Alignment:
| Q |
84 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctgaaata |
141 |
Q |
| |
|
|||||||||||||||||| | || |||||||||| ||||||||| ||||||||||| |
|
|
| T |
17565967 |
aattgtcgcgtttaacctcaaacaagagattttcatcgaggttcctcttcctgaaata |
17566024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 7612201 - 7612157
Alignment:
| Q |
85 |
attgtcgcgtttaacctaacactcgagattttcaatgaggttcct |
129 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||||||||||||||| |
|
|
| T |
7612201 |
attgtcgcttttaaccttacacaagagattttcaatgaggttcct |
7612157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 182 - 372
Target Start/End: Complemental strand, 45243847 - 45243657
Alignment:
| Q |
182 |
cggttctggaagggtgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaa |
281 |
Q |
| |
|
||||| ||| || ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | |||||||| |||||||| |
|
|
| T |
45243847 |
cggttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggttctagagatatttggtgtaa |
45243748 |
T |
|
| Q |
282 |
actttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttg |
372 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||| | |||| | |||||||| |||| |||||||||| ||| |||||| ||||||||| |
|
|
| T |
45243747 |
actttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattcgagtgatcgaagtaaagttctgttg |
45243657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 189 - 310
Target Start/End: Complemental strand, 45230576 - 45230452
Alignment:
| Q |
189 |
ggaagggtgtctttgtatgattgtgaattatcaaactgctaaaattgatg---tttgggtgatgaaagaatatggatgtagagatagctggtgtaaactt |
285 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
45230576 |
ggaagagtgtctttgtatgattgtgaattatcaaactaataaaattgatgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactt |
45230477 |
T |
|
| Q |
286 |
tttactttggctgaatcgtgtttca |
310 |
Q |
| |
|
|||||||||| | ||||||| |||| |
|
|
| T |
45230476 |
tttactttggttaaatcgtggttca |
45230452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 221 - 372
Target Start/End: Complemental strand, 45238059 - 45237908
Alignment:
| Q |
221 |
aaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttaccttt |
320 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | |||||||||||||| ||| | | | |
|
|
| T |
45238059 |
aaactactcaaattgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttagttgaatcgtgtttcaattttcatct |
45237960 |
T |
|
| Q |
321 |
gagagctttgaggattttaggttattcgagcgatagaagtatggttctgttg |
372 |
Q |
| |
|
|| | |||||| |||| ||||||| |||||| |||||| ||||||||| |
|
|
| T |
45237959 |
gaaattgttgaggcctttatgttattcaagcgatcgaagtaaagttctgttg |
45237908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 45230351 - 45230295
Alignment:
| Q |
387 |
gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcc |
443 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||| | ||||| |||||||||| |
|
|
| T |
45230351 |
gaagctgttttggtatgatttcaagagtgaacaagttactcatgttcaaggaattcc |
45230295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 45243613 - 45243557
Alignment:
| Q |
387 |
gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcc |
443 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| ||||||| |||||||||| |
|
|
| T |
45243613 |
gaagctgttttggtatgatctcaacagtgaacaacttacttatgttcaaggaattcc |
45243557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 84 - 309
Target Start/End: Complemental strand, 26575110 - 26574882
Alignment:
| Q |
84 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctga---aataggtgaagatgttaatagtgagagttttcaaattggtatt |
180 |
Q |
| |
|
|||| |||| |||||||| |||| |||| |||||| ||||||||| ||||||| |||||| ||| | ||||||||| |||||||| ||||| || || |
|
|
| T |
26575110 |
aattctcgcttttaacctttcacttgagactttcaacgaggttcctcttcctgatgaaataggggaacaagttaatagtaagagttttaaaattcgtgtt |
26575011 |
T |
|
| Q |
181 |
tcggttctggaagggtgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgta |
280 |
Q |
| |
|
| | | | | ||||||||||||||||| |||| ||||| || | |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26575010 |
gctgatttaggagggtgtctttgtatgactgtggattataaagatactaaaattgatgtttgggtgatgaaagaatatggatgtagagatagttggtgta |
26574911 |
T |
|
| Q |
281 |
aactttttactttggctgaatcgtgtttc |
309 |
Q |
| |
|
||||||||||| ||| | ||||||||||| |
|
|
| T |
26574910 |
aactttttactgtggttaaatcgtgtttc |
26574882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 387
Target Start/End: Complemental strand, 561340 - 561165
Alignment:
| Q |
212 |
tgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcag |
311 |
Q |
| |
|
||||| || ||||| |||| ||||||||||||| |||||||||||||||| ||||||||| |||||| | | |||||||||| ||| || |||||| |
|
|
| T |
561340 |
tgaataataaaactactaaggttgatgtttgggtaatgaaagaatatggatttagagatagttggtgtgtattgtttactttggaggaagtgtttttcag |
561241 |
T |
|
| Q |
312 |
tttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgag |
387 |
Q |
| |
|
| |||||| | | | | || | |||||||||||| | |||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
561240 |
tagaccttttacaccatggaagcctttaggttattctggtgatagaagtaaagttctgttggaagtagattgtgag |
561165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 561480 - 561423
Alignment:
| Q |
84 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctgaaata |
141 |
Q |
| |
|
|||||||||||||||||| | | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
561480 |
aattgtcgcgtttaaccttgcccaagagattttcaatgaggttcctcttcctgaaata |
561423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 13 - 443
Target Start/End: Original strand, 41966539 - 41966963
Alignment:
| Q |
13 |
atgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgaga |
112 |
Q |
| |
|
||||||| ||||||| | ||||| ||||||||| ||||||| | |||||||| || || ||| || |||||||||||||||||||||||| |||| |
|
|
| T |
41966539 |
atgggggtttttgttcacaattctcttcactggataatgaccaaggaacttgatggattacacccttgtttaattgtcgcgtttaacctaacacttgaga |
41966638 |
T |
|
| Q |
113 |
ttttcaatgaggttccttttcctg---aaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtctttgtatgat |
209 |
Q |
| |
|
||||||| |||||||| |||||| |||||||| || | || |||| ||||| | |||| ||| ||| |||||||||||||||| | |
|
|
| T |
41966639 |
ttttcaaccaggttcctcttcctgctgaaataggtcaaaa------------gaattttgaaatttctgtttctgttttgggagggtgtctttgtatggt |
41966726 |
T |
|
| Q |
210 |
tgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttc |
309 |
Q |
| |
|
|||| ||||||||||| | |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | |||| |||||| |
|
|
| T |
41966727 |
tgtggattatcaaactagcgatgttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaaactttttactttggttaaatcttgtttc |
41966826 |
T |
|
| Q |
310 |
agtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtga---gaagctgttttggtatgatc |
406 |
Q |
| |
|
| || | |||||| | | ||| || ||||||||| ||| |||||| |||| | |||||||||||||| | | ||| ||| ||||||||||||||| |
|
|
| T |
41966827 |
acttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaaggttctgttgcaaggaattaatgatttgaaactgttttggtatgatt |
41966926 |
T |
|
| Q |
407 |
tcaagagtgaatgtgttagttatgttgaaggaattcc |
443 |
Q |
| |
|
| ||||||||| ||| |||||||||||||||||| |
|
|
| T |
41966927 |
tgaagagtgaacaaattacttatgttgaaggaattcc |
41966963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 196 - 372
Target Start/End: Complemental strand, 37462626 - 37462447
Alignment:
| Q |
196 |
tgtctttgtatgattgtgaattatcaaa---ctgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactt |
292 |
Q |
| |
|
||||||||||||| |||||||||| ||| || ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |
|
|
| T |
37462626 |
tgtctttgtatgactgtgaattataaaaaaactactaaatttgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttgtactg |
37462527 |
T |
|
| Q |
293 |
tggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttg |
372 |
Q |
| |
|
||| | |||||||||||| || |||||||| | |||||||| |||| ||||||| || ||| |||||| |||| ||||| |
|
|
| T |
37462526 |
tggataaatcgtgtttcacttcacctttgaaatctttgaggcctttatgttattctagtgatggaagtaaggttttgttg |
37462447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 39427740 - 39427680
Alignment:
| Q |
233 |
ttgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttacttt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||| ||||||||| | |||||||| |
|
|
| T |
39427740 |
ttgatgtttgggtgatgaaagaatatggatatagatatagttggtgtaaattgtttacttt |
39427680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 39427872 - 39427819
Alignment:
| Q |
89 |
tcgcgtttaacctaacactcgagattttcaatgaggttccttttcctgaaatag |
142 |
Q |
| |
|
||||||||||| |||| | ||||||||||||||||||||| |||||||||||| |
|
|
| T |
39427872 |
tcgcgtttaacataactcaagagattttcaatgaggttcctcttcctgaaatag |
39427819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 84 - 291
Target Start/End: Complemental strand, 4726 - 4510
Alignment:
| Q |
84 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctga---aataggtgaagatg---ttaat---agtgagagttttcaaatt |
174 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||||||||||||| ||||||| |||||||||||| | ||||| | ||| ||| || ||||| |
|
|
| T |
4726 |
aattgtcgcttttaacctaacacttgaaattttcaatgaggttcctcttcctgacgaaataggtgaagaagaggttaattcaaatgacagtgttgaaatt |
4627 |
T |
|
| Q |
175 |
ggtatttcggttctggaagggtgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagct |
274 |
Q |
| |
|
| | || | | | ||| ||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||| | |||||| | |
|
|
| T |
4626 |
gatgttgctgctttgggaggatgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggattaaaagatagtt |
4527 |
T |
|
| Q |
275 |
ggtgtaaactttttact |
291 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4526 |
ggtgtaaactttttact |
4510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 36224520 - 36224454
Alignment:
| Q |
228 |
taaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttg |
294 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||| ||||||||| | ||||||||| |
|
|
| T |
36224520 |
taaatttgatgtttgggtgatgaaagaatatggatttagagatagttggtgtaaattgtttactttg |
36224454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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