View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20030_low_6 (Length: 287)
Name: NF20030_low_6
Description: NF20030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20030_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 283
Target Start/End: Original strand, 5268698 - 5268966
Alignment:
| Q |
15 |
acatatgatatgatgaaaaagttgtgactttcccttttctttctacctaaactaaaccttgcatcaattagcatcctcaataaaaggcaatccattctcc |
114 |
Q |
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| T |
5268698 |
acatatgatatgatgaaaaagttgtgactttcccttttctttctacctaaactaaaccttgcatcaattagcatcctcaataaaaggcaatccattctcc |
5268797 |
T |
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| Q |
115 |
ctcattcctcacaaaaggtccccagttaagtactattaagtagtaatctcaaagtgtcctaaactacacatcaaacactcatagcnnnnnnntcatacct |
214 |
Q |
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| T |
5268798 |
ctcattcctcacaaaaggacaccagttaagtactattaagtagtaatctcaaagtgtcctaaactacacatcaaacactcatagcaaaaaaatcatacct |
5268897 |
T |
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| Q |
215 |
atcatttgtatctttccaaaaacagataaactatctagtaagatgaagcaaattctcttcttctcactc |
283 |
Q |
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| T |
5268898 |
atcatttgtatctttccacaaacagataaactatctagtaagatgaagcaaattctcttcttcacactc |
5268966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 178
Target Start/End: Original strand, 5273140 - 5273272
Alignment:
| Q |
49 |
ttttctttctacctaaactaaaccttgcatcaattagcatcctcaataaaaggcaatccattctccctcattcctcacaaaaggtccccagttaagtact |
148 |
Q |
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| T |
5273140 |
ttttctttccaactaaacgaaacctttcaccaatgagcatcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtact |
5273239 |
T |
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| Q |
149 |
----attaagtagtaatctcaaagtgtcctaaac |
178 |
Q |
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| T |
5273240 |
atcaatcaagtagtaatctc-aagtgtcctaaac |
5273272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 26344446 - 26344402
Alignment:
| Q |
61 |
ctaaactaaaccttgcatcaattagcatcctcaataaaaggcaat |
105 |
Q |
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| T |
26344446 |
ctaatctaaaccttgcaccaatcaacatcctcaataaaaggcaat |
26344402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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