View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20030_low_7 (Length: 273)

Name: NF20030_low_7
Description: NF20030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20030_low_7
NF20030_low_7
[»] chr7 (21 HSPs)
chr7 (1-247)||(18514793-18515039)
chr7 (1-118)||(1985961-1986078)
chr7 (1-66)||(14076677-14076742)
chr7 (1-66)||(14386705-14386770)
chr7 (1-112)||(19604469-19604580)
chr7 (1-93)||(13416917-13417009)
chr7 (153-239)||(1986092-1986178)
chr7 (1-91)||(20058063-20058153)
chr7 (1-118)||(15571901-15572018)
chr7 (153-245)||(13417060-13417152)
chr7 (14-93)||(22100465-22100544)
chr7 (4-59)||(36255372-36255427)
chr7 (4-59)||(36263059-36263114)
chr7 (1-59)||(660853-660911)
chr7 (2-112)||(22021345-22021455)
chr7 (1-42)||(19344581-19344622)
chr7 (13-90)||(36260228-36260305)
chr7 (2-42)||(12819923-12819963)
chr7 (5-112)||(22028581-22028688)
chr7 (1-41)||(29454109-29454149)
chr7 (1-65)||(29874511-29874575)
[»] chr2 (1 HSPs)
chr2 (1-247)||(14514721-14514964)
[»] chr6 (12 HSPs)
chr6 (1-118)||(6921356-6921473)
chr6 (1-118)||(6947886-6948003)
chr6 (1-118)||(6954525-6954642)
chr6 (1-118)||(6935224-6935341)
chr6 (153-239)||(6921487-6921573)
chr6 (1-105)||(6942973-6943077)
chr6 (154-221)||(6954657-6954724)
chr6 (1-42)||(17369687-17369728)
chr6 (1-118)||(20770597-20770714)
chr6 (153-221)||(6948017-6948085)
chr6 (153-221)||(6935355-6935423)
chr6 (153-221)||(6943091-6943159)
[»] chr4 (7 HSPs)
chr4 (1-105)||(53774800-53774904)
chr4 (1-59)||(35767024-35767082)
chr4 (1-93)||(3557698-3557790)
chr4 (1-93)||(3565716-3565808)
chr4 (185-237)||(53774701-53774753)
chr4 (18-59)||(2911072-2911113)
chr4 (1-113)||(53790505-53790617)
[»] chr5 (4 HSPs)
chr5 (1-66)||(18964836-18964901)
chr5 (1-93)||(29597558-29597650)
chr5 (1-75)||(29642349-29642423)
chr5 (1-105)||(29647636-29647740)
[»] scaffold0867 (1 HSPs)
scaffold0867 (14-93)||(4688-4767)
[»] chr8 (1 HSPs)
chr8 (4-93)||(27618463-27618552)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 18514793 - 18515039
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacatgcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18514793 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacatgcaa 18514892  T
Q  101 tccattaacacagaaagacagtccactgttggagataaaattggacgagtaagtagctctttattacaagatcgagggagcaagaactgtgtatatgtct 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18514893 tccattaaaacagaaagacagtccactgttggagataaaattggacgagtaagtagctctttattacaagatcgagggagcaagaactgtgtatatgtct 18514992  T
Q  201 ctgtcttcaaatcaagcgagacaataacatattgttcaatggtaaga 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  18514993 ctgtcttcaaatcaagcgagacaataacatattgttcaatggtaaga 18515039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 1985961 - 1986078
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacatgcaa 100  Q
    ||||||||  |||||||||||||| | |||||| |||||||| | ||||| ||| | ||  |||||| ||||||||||||||||||||||| | | ||||    
T  1985961 aattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgccaaagaacaaaatgggttttcttgaaatcataagaaaaatagaggcaa 1986060  T
Q  101 tccattaacacagaaaga 118  Q
    ||||| ||||||||||||    
T  1986061 tccatcaacacagaaaga 1986078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14076742 - 14076677
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatg 66  Q
    ||||||||| |||||||||||||||| ||||||||||||||| | ||||| |||||||| ||||||    
T  14076742 aattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14076677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14386770 - 14386705
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatg 66  Q
    ||||||||| |||||||||||||||| ||||||||||||||| | ||||| |||||||| ||||||    
T  14386770 aattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14386705  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 19604469 - 19604580
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacatgcaa 100  Q
    ||||||||||||||||||||| |||| ||||||||||||||| | ||| | ||||||||| || ||  |||| |  ||||||| ||||||||| ||| |     
T  19604469 aattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataataaagtgagttttatgaaaatcatgagaaaaacaaatggag 19604568  T
Q  101 tccattaacaca 112  Q
    ||||| ||||||    
T  19604569 tccatcaacaca 19604580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 13416917 - 13417009
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaaca 93  Q
    |||||||| ||||| |  |||||| | ||||||||||||||| | ||||| |||||| || |||| | ||||||| |||||||||||||||||    
T  13416917 aattttaacgaattcaacccaagactcttcaactccaaattccttcatttgccatatgataaaataggttttcttaaaatcataagaaaaaca 13417009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 1986092 - 1986178
Alignment:
Q  153 gtagctctttattacaagatcgagggagcaagaactgtgtatatgtctctgtcttcaaatcaagcgagacaataacatattgttcaa 239  Q
    |||| |||| || |||| ||||||||||||| |||||||||||| ||||||||  ||||||||| |||| ||| |||  ||||||||    
T  1986092 gtagatcttcatcacaatatcgagggagcaacaactgtgtatatctctctgtccccaaatcaagtgagataattacaagttgttcaa 1986178  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 20058063 - 20058153
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaa 91  Q
    ||||||||| ||||||  |||||| | ||||||||  ||||| ||||||||||||||||  ||||| |||| ||| |||||||| ||||||    
T  20058063 aattttaagaaattgacaccaagactcttcaactctgaattcctccattttccatataacaaaatgactttgcttaaaatcatacgaaaaa 20058153  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 15571901 - 15572018
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacatgcaa 100  Q
    ||||||| ||||||||  |||||| | |||||||||||| ||   ||||| ||| || |  |||||| ||  ||||||||||||||||||||| |  |||    
T  15571901 aattttatggaattgaacccaagactcttcaactccaaactccctcatttgccacatgacaaaatgggttcccttgaaatcataagaaaaacaaagacaa 15572000  T
Q  101 tccattaacacagaaaga 118  Q
    ||||| ||||||||||||    
T  15572001 tccataaacacagaaaga 15572018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 13417060 - 13417152
Alignment:
Q  153 gtagctctttattacaagatcgagggagcaagaactgtgtatatgtctctgtcttcaaatcaagcgagacaataacatattgttcaatggtaa 245  Q
    |||||||||  | |||| ||||||| ||||| ||||||||||||||||| |||  ||| |||| ||||| ||| ||| |||||||||| ||||    
T  13417060 gtagctcttcctcacaacatcgaggtagcaacaactgtgtatatgtctcagtccccaactcaaccgagataatcacaaattgttcaattgtaa 13417152  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 22100544 - 22100465
Alignment:
Q  14 tgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaaca 93  Q
    ||||||||||| | || |||||||||||  | ||||| ||||||||| |||||  |||| |||||||||| |||||||||    
T  22100544 tgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaaca 22100465  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 36255427 - 36255372
Alignment:
Q  4 tttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataa 59  Q
    ||||| || |||||||||||| | ||||||||||||||  ||||||||||||||||    
T  36255427 tttaatgagttgagtccaagactcttcaactccaaatttttccattttccatataa 36255372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 36263114 - 36263059
Alignment:
Q  4 tttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataa 59  Q
    ||||| || |||||||||||| | ||||||||||||||| ||||| ||||||||||    
T  36263114 tttaatgagttgagtccaagactcttcaactccaaattcttccatcttccatataa 36263059  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 660853 - 660911
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataa 59  Q
    |||||||||||||||||||||||| | |||||||| |||||| | ||| | ||||||||    
T  660853 aattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataa 660911  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 22021455 - 22021345
Alignment:
Q  2 attttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacatgcaat 101  Q
    |||||||| |||||||||||||| | |||||||||| | ||   ||| | ||||||||  |||||| ||||||| | |  || ||||||||| |||||||    
T  22021455 attttaagtaattgagtccaagattcttcaactccataatccatcatctgccatataaccaaatgggttttcttcacaagatgagaaaaacaaatgcaat 22021356  T
Q  102 ccattaacaca 112  Q
    |||| ||||||    
T  22021355 ccatcaacaca 22021345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19344581 - 19344622
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattc 42  Q
    ||||||||| |||||||||||||| | |||||||||||||||    
T  19344581 aattttaagaaattgagtccaagattgttcaactccaaattc 19344622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 36260305 - 36260228
Alignment:
Q  13 ttgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaa 90  Q
    |||| ||||||| | ||||||||||||||| ||||| ||||||||||  ||||   |||||||| |||||| ||||||    
T  36260305 ttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttttcttgtaatcattagaaaa 36260228  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 12819923 - 12819963
Alignment:
Q  2 attttaaggaattgagtccaagagttttcaactccaaattc 42  Q
    |||||||||||||||||||| || | |||||||||||||||    
T  12819923 attttaaggaattgagtccaggattgttcaactccaaattc 12819963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 22028688 - 22028581
Alignment:
Q  5 ttaaggaattgagtccaagagttttcaactcca-aattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacatgcaatcc 103  Q
    ||||| |||||||||||||| | |||||||||| ||| ||| ||||||||||||||  |||||| ||| |||||   | | ||||||||| | |||||||    
T  22028688 ttaagtaattgagtccaagactcttcaactccataatccgt-cattttccatataacaaaatgggtttccttgaccacttcagaaaaacaaaggcaatcc 22028590  T
Q  104 attaacaca 112  Q
    || ||||||    
T  22028589 atcaacaca 22028581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29454109 - 29454149
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaatt 41  Q
    |||||||| ||||||||||||||| | ||||||||||||||    
T  29454109 aattttaaagaattgagtccaagaatcttcaactccaaatt 29454149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 29874575 - 29874511
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaat 65  Q
    ||||||||| ||| |||||||||| | |||||| |||||||  | ||||| ||||||||||||||    
T  29874575 aattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataatgaaat 29874511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 14514964 - 14514721
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacatgcaa 100  Q
    |||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||  | |||| |||||||||||||||||||||||||||||||     
T  14514964 aattttaaggaattgagtccaagaatcttcaactccaaattcatccattttccatataacaagatgggttttcttgaaatcataagaaaaacacatgcag 14514865  T
Q  101 tccattaacacagaaagacagtccactgttggagataaaattggacgagtaagtagctctttattacaagatcgagggagcaagaactgtgtatatgtct 200  Q
    ||| ||||||||||||||||||||||||    ||| | || |||||    |||||||| || ||| |||||| |||||||||||||||||||||||||||    
T  14514864 tcccttaacacagaaagacagtccactgacacagaaagaaatggac----aagtagcttttaattgcaagattgagggagcaagaactgtgtatatgtct 14514769  T
Q  201 ctgtcttcaaatcaagcgagacaataacatattgttc-aatggtaaga 247  Q
    ||||| |||||||||||||||||| |||| ||||||| ||||||||||    
T  14514768 ctgtcctcaaatcaagcgagacaaaaacaaattgttcaaatggtaaga 14514721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 6921356 - 6921473
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacatgcaa 100  Q
    |||||||||||||||||||||||| | ||||||||||||||| | ||||| ||| ||||  |||||| |||||||  |||||||||||||| | | ||||    
T  6921356 aattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaa 6921455  T
Q  101 tccattaacacagaaaga 118  Q
    ||||| || |||||||||    
T  6921456 tccatcaatacagaaaga 6921473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 6947886 - 6948003
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacatgcaa 100  Q
    |||||||||||||||||||||||| | ||||||||||||||| | ||||| ||| | ||  || ||| |||||||||||||||  |||||||| | ||||    
T  6947886 aattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccaaagaacaaagtgggttttcttgaaatcatgtgaaaaacaaaggcaa 6947985  T
Q  101 tccattaacacagaaaga 118  Q
    ||||| ||||||||||||    
T  6947986 tccatcaacacagaaaga 6948003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 6954525 - 6954642
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacatgcaa 100  Q
    ||||||||  |||||||||||||| | ||||||||||||||| | ||||| ||| ||||  |||||| |||| |||||||||||||| ||||| | ||||    
T  6954525 aattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagaggcaa 6954624  T
Q  101 tccattaacacagaaaga 118  Q
    ||||| || |||||||||    
T  6954625 tccatcaatacagaaaga 6954642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 6935224 - 6935341
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacatgcaa 100  Q
    |||||||||||||| ||||||||| | || |||||||||||| | ||||| ||| ||||   ||||| ||||||| ||||||||||||||| | | ||||    
T  6935224 aattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacataatgggttttcttaaaatcataagaaaaatagaggcaa 6935323  T
Q  101 tccattaacacagaaaga 118  Q
    ||||| ||  ||||||||    
T  6935324 tccatcaatccagaaaga 6935341  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 6921487 - 6921573
Alignment:
Q  153 gtagctctttattacaagatcgagggagcaagaactgtgtatatgtctctgtcttcaaatcaagcgagacaataacatattgttcaa 239  Q
    ||||||||| || |||| ||||||||||||| || ||||||||||||||||||  ||||||||| ||||  || ||| |||||||||    
T  6921487 gtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 6921573  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 6942973 - 6943077
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacatgcaa 100  Q
    ||||||||||||||| ||| |||| | ||||||||||||||| | ||||| | | ||||  |||| | ||||||| ||||||||||||||| | | ||||    
T  6942973 aattttaaggaattgcgtctaagattcttcaactccaaattccttcatttgctaaataacaaaataggttttcttaaaatcataagaaaaatagaggcaa 6943072  T
Q  101 tccat 105  Q
    |||||    
T  6943073 tccat 6943077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 6954657 - 6954724
Alignment:
Q  154 tagctctttattacaagatcgagggagcaagaactgtgtatatgtctctgtcttcaaatcaagcgaga 221  Q
    |||||||| || |||| |||| |||||||| ||||||||||||||||||||| ||| |||||| ||||    
T  6954657 tagctcttcatcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgaga 6954724  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 17369728 - 17369687
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattc 42  Q
    ||||||||| |||||||||||||||| |||||||||||||||    
T  17369728 aattttaagaaattgagtccaagagtcttcaactccaaattc 17369687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 20770714 - 20770597
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacatgcaa 100  Q
    |||||||||||||||| |||| || | ||||| ||||||||| | ||||| ||||||||  ||||   |||| || | ||||| ||||||||| || |||    
T  20770714 aattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaataagtttttttaacatcatgagaaaaacaaatacaa 20770615  T
Q  101 tccattaacacagaaaga 118  Q
    ||||| |||||| |||||    
T  20770614 tccatcaacacacaaaga 20770597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 6948017 - 6948085
Alignment:
Q  153 gtagctctttattacaagatcgagggagcaagaactgtgtatatgtctctgtcttcaaatcaagcgaga 221  Q
    ||||||||| || |||| ||||||||||||| ||| |||||||| ||||||||  ||||||||| ||||    
T  6948017 gtagctcttcatcacaacatcgagggagcaacaaccgtgtatatctctctgtccccaaatcaagtgaga 6948085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 6935355 - 6935423
Alignment:
Q  153 gtagctctttattacaagatcgagggagcaagaactgtgtatatgtctctgtcttcaaatcaagcgaga 221  Q
    ||||||||| || |||| ||||||||||||| || | |||| |||||||||||  ||||||||| ||||    
T  6935355 gtagctcttcatcacaacatcgagggagcaacaattttgtacatgtctctgtccccaaatcaagtgaga 6935423  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 6943091 - 6943159
Alignment:
Q  153 gtagctctttattacaagatcgagggagcaagaactgtgtatatgtctctgtcttcaaatcaagcgaga 221  Q
    ||||||||| || |||| || |||||||||| || | ||||||||||||||||  ||||||||| ||||    
T  6943091 gtagctcttcatcacaacattgagggagcaacaattttgtatatgtctctgtccccaaatcaagtgaga 6943159  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 53774904 - 53774800
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacatgcaa 100  Q
    |||||||||||||||||||||||| | ||||||||||||||| | ||||| ||||||||  |||||  |||  || ||||||||||||||||| || |||    
T  53774904 aattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttctttaaaatcataagaaaaacaaatacaa 53774805  T
Q  101 tccat 105  Q
    |||||    
T  53774804 tccat 53774800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35767082 - 35767024
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataa 59  Q
    ||||||||||| |||| ||||||| | ||||||||||||||| ||||| ||||||||||    
T  35767082 aattttaaggagttgaatccaagactcttcaactccaaattcttccatcttccatataa 35767024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 3557790 - 3557698
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaaca 93  Q
    ||||||||| |||||||||||||| | |||||| |||||||| | ||| | ||||||||| |||| | ||| |||| ||  ||||||||||||    
T  3557790 aattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggtttccttgtaagaataagaaaaaca 3557698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 3565808 - 3565716
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaaca 93  Q
    ||||||||| |||||||||||||| | |||||| |||||||| | ||| | ||||||||| |||| | |||||||  ||  ||||||||||||    
T  3565808 aattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttttcttataacaataagaaaaaca 3565716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 53774753 - 53774701
Alignment:
Q  185 aactgtgtatatgtctctgtcttcaaatcaagcgagacaataacatattgttc 237  Q
    |||||||||||||||||||||| |||||||||||| | ||| ||| |||||||    
T  53774753 aactgtgtatatgtctctgtctccaaatcaagcgaaataatcacaaattgttc 53774701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 2911113 - 2911072
Alignment:
Q  18 tccaagagttttcaactccaaattcgtccattttccatataa 59  Q
    ||||||||||||||  ||||||||| ||||||||||||||||    
T  2911113 tccaagagttttcatttccaaattcttccattttccatataa 2911072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 53790617 - 53790505
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacatgcaa 100  Q
    ||||||||| |||||||||||||| | ||||| ||||||||    ||| ||||||||||| |||||  || |||| | ||  | |||||||||||  |||    
T  53790617 aattttaagaaattgagtccaagattgttcaaatccaaattttgtcatcttccatataataaaatgagttctcttaacatagtgagaaaaacacaaacaa 53790518  T
Q  101 tccattaacacag 113  Q
    |||||||| ||||    
T  53790517 tccattaagacag 53790505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 18964836 - 18964901
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatg 66  Q
    ||||||||| |||||||||||||||| ||||||||||||||| | ||||| |||||||||||||||    
T  18964836 aattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatg 18964901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 29597558 - 29597650
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaaca 93  Q
    |||||||||||||||||||||||| | |||||||||||||||   ||||| ||||||||  |||||  ||| ||||||||  | |||||||||    
T  29597558 aattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagtttccttgaaatggtgagaaaaaca 29597650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 29642423 - 29642349
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttctt 75  Q
    |||||||||||||||||||||||| | ||||| |||||||||   ||||| |||||||| ||||||  |||||||    
T  29642423 aattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttctt 29642349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 29647740 - 29647636
Alignment:
Q  1 aattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacatgcaa 100  Q
    |||||||||||||||||||||||| | ||||| |||||||||   ||||| ||||||||  |||||  ||||||| | ||  | ||||||||| | ||||    
T  29647740 aattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacaaaatgagttttcttaagatggtgagaaaaacaaaggcaa 29647641  T
Q  101 tccat 105  Q
    |||||    
T  29647640 tccat 29647636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 4688 - 4767
Alignment:
Q  14 tgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaaca 93  Q
    ||||||||||| | || |||||||||||  | ||||| ||||||||| |||||  |||| |||||||||| |||||||||    
T  4688 tgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaaca 4767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 27618552 - 27618463
Alignment:
Q  4 tttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaaca 93  Q
    |||||| || ||||||||||| | ||||||||| | ||| ||||||||||||||||  |||||  ||| ||| ||||||| | |||||||    
T  27618552 tttaagcaactgagtccaagactcttcaactccgagttcttccattttccatataacaaaatgagtttgcttaaaatcatgacaaaaaca 27618463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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