View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20031_high_10 (Length: 344)
Name: NF20031_high_10
Description: NF20031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20031_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 43532703 - 43533028
Alignment:
| Q |
18 |
ctattaaactttttgcagcaacgtttgagatgtgaaatcgataaactaaaaataccgctttatatttgttggaaggtacctcctttttagagaggatgta |
117 |
Q |
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| T |
43532703 |
ctattaaactttttgcagcaacgtttgagacgtgaaatcgataaactaaaaataccgctttatatttgttggaaggtacctcctttttagagaggatgta |
43532802 |
T |
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| Q |
118 |
atctattaagtggtgaatatattgtgtttttacttgtttagctgtcatataatctgtttctctatttatgtagtgtcaaatataaaagactaaactttac |
217 |
Q |
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| T |
43532803 |
atctattaagtggtgaatatattgtgtttttacttgtttagctgtcatataatctgtttctctatttatgtagtgtcaaatataaaagactaaactttac |
43532902 |
T |
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| Q |
218 |
atatagataattgattgtgctgagtgattcctcaccgccggttcagtaaactatttggccattcaagagtatatatgattattatatataccaatgtaca |
317 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43532903 |
atatagataattgattgtgctgagcgattcctcaccgccggttcagtaaactatttggccattcaagagtatatatgattattatatataccaatgtaca |
43533002 |
T |
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| Q |
318 |
tgcttctaaaaatgctctttctgtgc |
343 |
Q |
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|||||||||||||||||||||||||| |
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| T |
43533003 |
tgcttctaaaaatgctctttctgtgc |
43533028 |
T |
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