View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20031_high_14 (Length: 270)

Name: NF20031_high_14
Description: NF20031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20031_high_14
NF20031_high_14
[»] chr6 (10 HSPs)
chr6 (95-253)||(2963832-2963991)
chr6 (95-253)||(2951283-2951451)
chr6 (150-253)||(2926566-2926669)
chr6 (162-253)||(2929304-2929395)
chr6 (162-253)||(3004347-3004438)
chr6 (155-253)||(2934010-2934108)
chr6 (153-253)||(2972409-2972507)
chr6 (155-201)||(2982286-2982332)
chr6 (150-232)||(2997987-2998069)
chr6 (95-129)||(2972328-2972362)
[»] chr7 (1 HSPs)
chr7 (98-253)||(3338532-3338690)


Alignment Details
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 95 - 253
Target Start/End: Original strand, 2963832 - 2963991
Alignment:
Q  95 cattttgaaaatcttcatataataaggacacgagggagttccaaaagacaacctgattccaaagaccaagcttttcattttcttgctga-ctctcaagat 193  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2963832 cattttgaaagtattcatataataaggacacgagggagttccaaaagacaacctgattccaaagaccaagcttttcattttcttgctgacctctcaagat 2963931  T
Q  194 gtcatcctcccgcttggtgaatgatatcaatgcgatgctccacacagcacagccaccttc 253  Q
    ||||| |||||||||||| |||||||||||  | |||||| |||||||| ||||||||||    
T  2963932 gtcattctcccgcttggttaatgatatcaaaaccatgctcgacacagcagagccaccttc 2963991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 95 - 253
Target Start/End: Original strand, 2951283 - 2951451
Alignment:
Q  95 cattttgaaaatcttcatataa-taaggacacgagggagttcc-----aaaagac----aacctgattccaaagaccaagcttttcattttcttgctgac 184  Q
    |||||||||||||||||||||| ||||||||| ||||||| ||     | |||||    ||||| |||||||| ||||||||||||||| ||||||||||    
T  2951283 cattttgaaaatcttcatataaataaggacacaagggagtgccgtgccataagacttgaaacctaattccaaataccaagcttttcattctcttgctgac 2951382  T
Q  185 tctcaagatgtcatcctcccgcttggtgaatgatatcaatgcgatgctccacacagcacagccaccttc 253  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2951383 tctgaagatgtcatcctcctgcttggtgaatgatatcaatgcgatgctccacacagcacatccaccttc 2951451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 150 - 253
Target Start/End: Original strand, 2926566 - 2926669
Alignment:
Q  150 attccaaagaccaagcttttcattttcttgctgactctcaagatgtcatcctcccgcttggtgaatgatatcaatgcgatgctccacacagcacagccac 249  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| | |||||| |||||||| || |||    
T  2926566 attccaaagaccaagcttttcattttcttggtgactctcaagatgtcatcctcccgcttgctgaaggatatcaattccatgctcaacacagcagagtcac 2926665  T
Q  250 cttc 253  Q
    ||||    
T  2926666 cttc 2926669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 162 - 253
Target Start/End: Original strand, 2929304 - 2929395
Alignment:
Q  162 aagcttttcattttcttgctgactctcaagatgtcatcctcccgcttggtgaatgatatcaatgcgatgctccacacagcacagccaccttc 253  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| ||||||||||    
T  2929304 aagcttttcattttcttgctaactctcaagatgtcatcctcccgcttggtggatgatatcaatgccatgctcaacacagcagagccaccttc 2929395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 162 - 253
Target Start/End: Complemental strand, 3004438 - 3004347
Alignment:
Q  162 aagcttttcattttcttgctgactctcaagatgtcatcctcccgcttggtgaatgatatcaatgcgatgctccacacagcacagccaccttc 253  Q
    |||||||||||||||||||| |||||||| ||||||| |||| |||||||| ||||||||||||| |||||| |||||||  ||||||||||    
T  3004438 aagcttttcattttcttgctaactctcaatatgtcattctccagcttggtggatgatatcaatgccatgctcaacacagccgagccaccttc 3004347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 2934010 - 2934108
Alignment:
Q  155 aaagaccaagcttttcattttcttgctgactctcaagatgtcatcctcccgcttggtgaatgatatcaatgcgatgctccacacagcacagccaccttc 253  Q
    |||||||||||||||||||||||||||||||||||| ||||||  |||| ||||||| | |||||||||||| |||||| ||| |||| || |||||||    
T  2934010 aaagaccaagcttttcattttcttgctgactctcaatatgtcactctccagcttggttattgatatcaatgccatgctcgacaaagcagagtcaccttc 2934108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 2972409 - 2972507
Alignment:
Q  153 ccaaagaccaagcttttcattttcttgctga-ctctcaagatgtcatcctcccgcttggtgaatgatatcaatgcgatgctccacacagcacagccacct 251  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||  |||| ||||||||   |||||||||| ||||||| |||||| | ||||||||    
T  2972409 ccaaagaccaagcttttcattttcttgctcacctctcaagatgtcactctcctgcttggtg---gatatcaatgtgatgctcgacacagaagagccacct 2972505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 2982286 - 2982332
Alignment:
Q  155 aaagaccaagcttttcattttcttgctgactctcaagatgtcatcct 201  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  2982286 aaagaccaagcttttcatttccttgctgactctcaagatgtcatcct 2982332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 2998069 - 2997987
Alignment:
Q  150 attccaaagaccaagcttttcattttcttgctgactctcaagatgtcatcctcccgcttggtgaatgatatcaatgcgatgct 232  Q
    |||||||  |||||||||||||||||||||||||||||||| |||||||  |||   |||||| ||||||||||||| |||||    
T  2998069 attccaacaaccaagcttttcattttcttgctgactctcaatatgtcattttccgatttggtggatgatatcaatgccatgct 2997987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 129
Target Start/End: Original strand, 2972328 - 2972362
Alignment:
Q  95 cattttgaaaatcttcatataataaggacacgagg 129  Q
    ||||||||||||||| |||||||||||||||||||    
T  2972328 cattttgaaaatctttatataataaggacacgagg 2972362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 98 - 253
Target Start/End: Original strand, 3338532 - 3338690
Alignment:
Q  98 tttgaaaatcttcatataataaggacacgagggagttccaaaagac----aacctgattccaaagaccaagcttttcattttcttgctgactctcaagat 193  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||    || || |||||||||||||| |||||||||||||||||||||||||||||    
T  3338532 tttgaaaatcttcatataataaggacacgagg-agtcctaaaagacttgaaatctaattccaaagaccaaccttttcattttcttgctgactctcaagat 3338630  T
Q  194 gtcatcctcccgcttggtgaatgatatcaatgcgatgctccacacagcacagccaccttc 253  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||    
T  3338631 gtcatcctcccgcttggtggatgatatcaatgcgatgctcgacacatcagagccaccttc 3338690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University