View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20031_high_17 (Length: 216)

Name: NF20031_high_17
Description: NF20031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20031_high_17
NF20031_high_17
[»] chr8 (3 HSPs)
chr8 (126-197)||(16072897-16072968)
chr8 (129-197)||(15258362-15258430)
chr8 (135-195)||(37378998-37379058)
[»] chr7 (5 HSPs)
chr7 (126-197)||(16253151-16253222)
chr7 (135-197)||(5057079-5057141)
chr7 (126-197)||(16301270-16301340)
chr7 (89-131)||(16253262-16253304)
chr7 (89-131)||(16301188-16301230)
[»] chr4 (5 HSPs)
chr4 (126-197)||(5066893-5066964)
chr4 (126-197)||(11489317-11489388)
chr4 (126-179)||(8912232-8912285)
chr4 (126-179)||(9273935-9273988)
chr4 (78-129)||(11489223-11489275)
[»] chr1 (3 HSPs)
chr1 (126-178)||(17596584-17596636)
chr1 (153-195)||(19883061-19883103)
chr1 (135-195)||(26780341-26780402)
[»] chr2 (2 HSPs)
chr2 (126-197)||(30972038-30972109)
chr2 (132-195)||(5370063-5370126)
[»] chr6 (3 HSPs)
chr6 (126-171)||(6633130-6633175)
chr6 (150-197)||(14274831-14274878)
chr6 (126-179)||(18626809-18626862)
[»] chr3 (2 HSPs)
chr3 (153-197)||(33797749-33797793)
chr3 (126-197)||(32202788-32202859)


Alignment Details
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 16072968 - 16072897
Alignment:
Q  126 accatggaaatggaaatgaagatgaacataaatgaaaacatagaaaactaaattggtagattaaatagagtt 197  Q
    |||||| |||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  16072968 accatgaaaattgaaatgaagatgaacataaatggaaacatagaaaactaaattgatagattaaatagagtt 16072897  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 15258362 - 15258430
Alignment:
Q  129 atggaaatggaaatgaagatgaacataaatgaaaacatagaaaactaaattggtagattaaatagagtt 197  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||  |||| || ||||||||    
T  15258362 atggaaatggaaatgaagatgaagataaatgaaagcatagaaaactaaattaatagaatagatagagtt 15258430  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 37378998 - 37379058
Alignment:
Q  135 atggaaatgaagatgaacataaatgaaaacatagaaaactaaattggtagattaaatagag 195  Q
    ||||| ||||| || ||||||| | ||||||| ||||||||||||| ||||||||||||||    
T  37378998 atggagatgaaaataaacataagtaaaaacatggaaaactaaattgatagattaaatagag 37379058  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 16253222 - 16253151
Alignment:
Q  126 accatggaaatggaaatgaagatgaacataaatgaaaacatagaaaactaaattggtagattaaatagagtt 197  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  16253222 accattgaaatggaaattaagatgaacataaatgaaaacatagaaaactaaattgatagattagatagagtt 16253151  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 5057079 - 5057141
Alignment:
Q  135 atggaaatgaagatgaacataaatgaaaacatagaaaactaaattggtagattaaatagagtt 197  Q
    ||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  5057079 atggaaatgaatataaacataaatgaaaacatagaaaactaaattgatagattaaatatagtt 5057141  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 16301270 - 16301340
Alignment:
Q  126 accatggaaatggaaatgaagatgaacataaatgaaaacatagaaaactaaattggtagattaaatagagtt 197  Q
    ||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||| || |||| ||||||||    
T  16301270 accattgaaatggaaatgaagatgaatataaatgaaaacata-aaaaataaattgataaattagatagagtt 16301340  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 16253304 - 16253262
Alignment:
Q  89 tttatatatcacaagttaataaataaatcataacatcaccatg 131  Q
    |||||||||||||||| ||||||||||||||||  ||||||||    
T  16253304 tttatatatcacaagtaaataaataaatcataatctcaccatg 16253262  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 16301188 - 16301230
Alignment:
Q  89 tttatatatcacaagttaataaataaatcataacatcaccatg 131  Q
    |||||||||||||||| ||||||||||||||||  ||||||||    
T  16301188 tttatatatcacaagtaaataaataaatcataatctcaccatg 16301230  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 5066964 - 5066893
Alignment:
Q  126 accatggaaatggaaatgaagatgaacataaatgaaaacatagaaaactaaattggtagattaaatagagtt 197  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  5066964 accatggaaatggaaatcaagataaacataaatcaaaacatagaaaactaaattgatagattaaatagagtt 5066893  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 11489317 - 11489388
Alignment:
Q  126 accatggaaatggaaatgaagatgaacataaatgaaaacatagaaaactaaattggtagattaaatagagtt 197  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| ||||| ||||    
T  11489317 accatggaaatggaaatgaagatgaacataaatgaaaatatggaaaactaaattgatagatcaaatacagtt 11489388  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 8912285 - 8912232
Alignment:
Q  126 accatggaaatggaaatgaagatgaacataaatgaaaacatagaaaactaaatt 179  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||||||||||    
T  8912285 accatggaaatggaaatgaagatgaagataattgaaaatatagaaaactaaatt 8912232  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 9273988 - 9273935
Alignment:
Q  126 accatggaaatggaaatgaagatgaacataaatgaaaacatagaaaactaaatt 179  Q
    ||||| |||||||||||||||||| | | |||||||||||||||||||||||||    
T  9273988 accatagaaatggaaatgaagatggaaacaaatgaaaacatagaaaactaaatt 9273935  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 11489223 - 11489275
Alignment:
Q  78 ggtgctacatttt-tatatatcacaagttaataaataaatcataacatcacca 129  Q
    ||||||||| ||| |||| ||||||||| ||||||||||||||||| ||||||    
T  11489223 ggtgctacaatttatatagatcacaagtaaataaataaatcataacctcacca 11489275  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 17596636 - 17596584
Alignment:
Q  126 accatggaaatggaaatgaagatgaacataaatgaaaacatagaaaactaaat 178  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  17596636 accatggaaatggaaatgaagatggaaataaatgaaaacatagaaaactaaat 17596584  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 19883061 - 19883103
Alignment:
Q  153 ataaatgaaaacatagaaaactaaattggtagattaaatagag 195  Q
    |||||||||||||||||||||||||||| ||||| ||||||||    
T  19883061 ataaatgaaaacatagaaaactaaattgatagatcaaatagag 19883103  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 26780341 - 26780402
Alignment:
Q  135 atggaaatgaagatgaacataaatgaaaacat-agaaaactaaattggtagattaaatagag 195  Q
    ||||| ||||| || ||||||||||||| ||| | |||||||||||| ||||||||||||||    
T  26780341 atggagatgaaaataaacataaatgaaagcatgaaaaaactaaattgatagattaaatagag 26780402  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 30972109 - 30972038
Alignment:
Q  126 accatggaaatggaaatgaagatgaacataaatgaaaacatagaaaactaaattggtagattaaatagagtt 197  Q
    |||||| ||||||||||||||||| | |||||| ||||||||||||||||||||  |||| || ||||||||    
T  30972109 accatgaaaatggaaatgaagatggaaataaattaaaacatagaaaactaaattaatagaatagatagagtt 30972038  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 5370126 - 5370063
Alignment:
Q  132 gaaatggaaatgaagatgaacataaatgaaaacatagaaaactaaattggtagattaaatagag 195  Q
    ||||| ||||| ||||| | ||||||| |||| || ||||||||||||| ||||||||||||||    
T  5370126 gaaatagaaataaagataagcataaataaaaatatggaaaactaaattgatagattaaatagag 5370063  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 6633130 - 6633175
Alignment:
Q  126 accatggaaatggaaatgaagatgaacataaatgaaaacatagaaa 171  Q
    |||||||||||||||||||||||| | |||||||||||||||||||    
T  6633130 accatggaaatggaaatgaagatggaaataaatgaaaacatagaaa 6633175  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 14274878 - 14274831
Alignment:
Q  150 aacataaatgaaaacatagaaaactaaattggtagattaaatagagtt 197  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||||||||    
T  14274878 aacataaatgaaaacatggaaaactaaattgatagataaaatagagtt 14274831  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 18626862 - 18626809
Alignment:
Q  126 accatggaaatggaaatgaagatgaacataaatgaaaacatagaaaactaaatt 179  Q
    |||||||||||||||||||||||| | |||||| |||| |||||||| ||||||    
T  18626862 accatggaaatggaaatgaagatggaaataaataaaaatatagaaaaataaatt 18626809  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 33797793 - 33797749
Alignment:
Q  153 ataaatgaaaacatagaaaactaaattggtagattaaatagagtt 197  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||    
T  33797793 ataaatgaaaacatagaaaagtaaattgatagattaaatagagtt 33797749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 32202788 - 32202859
Alignment:
Q  126 accatggaaatggaaatgaagatgaacataaatgaaaacatagaaaactaaattggtagattaaatagagtt 197  Q
    ||||| |||||| ||||||||||| | ||||||||||||||||||||||| |||  |||| || ||||||||    
T  32202788 accatagaaatgaaaatgaagatggaaataaatgaaaacatagaaaactatattaatagaatagatagagtt 32202859  T

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