View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20031_high_2 (Length: 756)

Name: NF20031_high_2
Description: NF20031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20031_high_2
NF20031_high_2
[»] chr1 (1 HSPs)
chr1 (13-713)||(49849192-49849907)


Alignment Details
Target: chr1 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 13 - 713
Target Start/End: Original strand, 49849192 - 49849907
Alignment:
Q  13 aatatagtgtattagtaagctatcttcttcaagagtccaaggtcctcttctcagctcattttcttctttagaattaccaaactctttctttgtagttgtg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49849192 aatatagtgtattagtaagctatcttcttcaagagtccaaggtcctcttctcagctcattttcttctttagaattaccaaactctttctttgtagttgtg 49849291  T
Q  113 gacatagctaatgttctagtggtgttcatcatacaaagatgtacaagctgtgttcaagatcnnnnnnntattgaaggtgtggaatttaaacactaggtag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  49849292 gacatagctaatgttctagtggtgttcatcatacaaagatgtacaagctgtgttcaagataaaaaaaaaattgaaggtgtggaatttaaacactaggtag 49849391  T
Q  213 ttgcaatttagaaataagttttaggagtgtgagtaacatggtacatgttcatgcttttatatatgctcctcatggaatttcactatacgggtttggtaga 312  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49849392 ttgcaatttagaaatatgttttaggagtgtgagtaacatggtacatgttcatgcttttatatatgctcctcatggaatttcactatacgggtttggtaga 49849491  T
Q  313 ctaggtactaggcagtagggactaacagtctatacgttaggaccaagaataaataaaatatatatat----------gatttaaataatatttgatgaaa 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||          |||||||||||||||||||||||    
T  49849492 ctaggtactaggcagtagggactaacagtctatacgttaggaccaagaataaacaaaatatatatatatatatatatgatttaaataatatttgatgaaa 49849591  T
Q  403 atcgacttgaataccttacgtaagg-tttcatgtttgagtatcgttgacgaaaaaatatggcttgacgataaacaaaatgtcgataaatacatcgttctg 501  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  49849592 atcgacttgaataccttacgtaagggtttcatgtttgattatcgttgacgaaaaaatatggcttgacgataaacaaaatatcgataaatacatcgttctg 49849691  T
Q  502 ataacatagtaccttgttctatgtaatcaattatgtttctctaatttctatatattattcgatgtcttaaaaaatttctatattgtagaacactaattat 601  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  49849692 ataacatagtatcttgttctatgtaatcaattatgtttctctaatttctatatattatttgatgtcttaaaaaatttctatattgtagaacactaattat 49849791  T
Q  602 ttccatcaagaaaaagaacactttttattttacatcaagaatactataattataaatacattatg----ttttcttttaccaaattataacgtatactct 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||| ||||||||||||||||| ||||||||    
T  49849792 ttccatcaagaaaaagaacactttttattttacatcaagaatactataattataaatacattatgtttttttttttttaccaaattataacatatactct 49849891  T
Q  698 tatactttggcttctt 713  Q
    ||||||||||||||||    
T  49849892 tatactttggcttctt 49849907  T

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