View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20031_high_7 (Length: 449)
Name: NF20031_high_7
Description: NF20031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20031_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 32 - 436
Target Start/End: Complemental strand, 40522798 - 40522392
Alignment:
| Q |
32 |
tgtacaaactattagccaatcaactatttggattt-ggctcatcaccatcttaattgaaacacaagtatggctagtttgtttcatgttagttaagatgaa |
130 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40522798 |
tgtacaaactatgagccaatcaactatttggattttggctcatcaccatcttaattgaaacacaagtatggctagtttgtttcatgttagttaagatgaa |
40522699 |
T |
|
| Q |
131 |
tgatttatacacctaaaattaattaagattttgaatgtagttgtaattccttgaatttttgtgtggtcttggtcattagnnnnnnnggtggtcctattag |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
40522698 |
tgatttatacacctaaaattaattaagattttgaatgtagttgtaattccttgaatttttgtgtggtcttggtcattagtttttttg-tggtcctattag |
40522600 |
T |
|
| Q |
231 |
tttgttttaagtgttatcatagagtcatcatttgtctaaataagcttgagtggtttaaacaaaattaactattaatattata--ttaattttcaattcaa |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40522599 |
tttgttttaagtgttatcatagagtcatcatttgtctaaataagcttgagtggtttaaacaaaattaactattaatattatacattaattttcaattcaa |
40522500 |
T |
|
| Q |
329 |
aatcattggatcgagagggtcgggtgtctttcaatttaattagaaattttagatttaaattcaatcaaatgaataaaacaatgttaaaacttttaaagga |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | | ||||| |||||||||||||||||||||||| |
|
|
| T |
40522499 |
aatcattggatcgagagggtcgggtgtctttcaatttaattagaaattttaaatttaaattcaattataagaatacaacaatgttaaaacttttaaagga |
40522400 |
T |
|
| Q |
429 |
aatattga |
436 |
Q |
| |
|
||||||| |
|
|
| T |
40522399 |
gatattga |
40522392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University