View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20031_low_1 (Length: 836)

Name: NF20031_low_1
Description: NF20031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20031_low_1
NF20031_low_1
[»] chr4 (3 HSPs)
chr4 (606-822)||(47710890-47711112)
chr4 (375-513)||(47710660-47710798)
chr4 (617-753)||(45772717-45772852)
[»] chr8 (3 HSPs)
chr8 (617-822)||(43305943-43306148)
chr8 (390-513)||(27266326-27266449)
chr8 (617-753)||(41828264-41828400)
[»] chr3 (1 HSPs)
chr3 (19-159)||(44356374-44356516)
[»] chr6 (4 HSPs)
chr6 (378-500)||(22991045-22991168)
chr6 (378-500)||(23797230-23797353)
chr6 (285-350)||(22991200-22991265)
chr6 (285-350)||(23797133-23797198)
[»] chr7 (1 HSPs)
chr7 (658-733)||(32606547-32606622)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 606 - 822
Target Start/End: Original strand, 47710890 - 47711112
Alignment:
Q  606 gaatcataataatgggaaaccaaagattgcttttcttgttgggagcaattgctgttaattgtttactgtttcagtcaattttggttccacatgaaaatga 705  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47710890 gaatcattataatgggaaaccaaagattgcttttcttgttgggagcaattgctgttaattgtttactgtttcagtcaattttggttccatatgaaaatga 47710989  T
Q  706 aagagctccttgatcttcttctgatttcaataatgctcttatggtggagaaa--gtgaatattcccattattgaagatgtaggagtgcataactatgcaa 803  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  47710990 aagagctccttgatcttcttctgatttcaataatgctcttatggtggagaaagtgtgaatattcccattattgaagatgtaggagtgcataactatgcaa 47711089  T
Q  804 ag----agtagtttagtttctga 822  Q
    ||    |||||||||||||||||    
T  47711090 agatgtagtagtttagtttctga 47711112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 375 - 513
Target Start/End: Original strand, 47710660 - 47710798
Alignment:
Q  375 ctcattgaatattgcatcagatgtaacagaaaaactatctaccttgaggtggtgaacatcactcccacagattctaccagctttcattttaattctgaca 474  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47710660 ctcattgaatattgcatcatatgtaacagaaaaactatctaccttgaggtggtgaacatcactcccacagattctactagctttcattttaattctgaca 47710759  T
Q  475 tcattgggttcttcaaacatacaaaaatagttatatcag 513  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  47710760 tcattgggtccttcaaacatacaaaaatagttatatcag 47710798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 617 - 753
Target Start/End: Original strand, 45772717 - 45772852
Alignment:
Q  617 atgggaaaccaaagattgcttttcttgttgggagcaattgctgttaattgtttactgtttcagtcaattttggttccacatgaaaatgaaagagctcctt 716  Q
    ||||||||||||| ||| ||||| ||||||| |||| |||||||||||||||||||||||||  |||||||||||||| | ||||||||||||| |||||    
T  45772717 atgggaaaccaaatattactttttttgttgg-agcacttgctgttaattgtttactgtttcaaccaattttggttccatacgaaaatgaaagagttcctt 45772815  T
Q  717 gatcttcttctgatttcaataatgctcttatggtgga 753  Q
    | ||||||||||||||| |||||||| ||||||||||    
T  45772816 ggtcttcttctgatttccataatgctgttatggtgga 45772852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 3e-81; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 617 - 822
Target Start/End: Complemental strand, 43306148 - 43305943
Alignment:
Q  617 atgggaaaccaaagattgcttttcttgttgggagcaattgctgttaattgtttactgtttcagtcaattttggttccacatgaaaatgaaagagctcctt 716  Q
    ||||||||||||||||| ||||| |||||||||||| |||||||||||| |||||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  43306148 atgggaaaccaaagattactttttttgttgggagcacttgctgttaattatttactatttcaatcaattttggttccatatgaaaatgaaagagctcctt 43306049  T
Q  717 gatcttcttctgatttcaataatgctcttatggtggagaaagtgaatattcccattattgaagatgtaggagtgcataactatgcaaagagtagtttagt 816  Q
    | |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||| |||||||| |||||||||||||||||||    
T  43306048 ggtcttcttctgatttcaataatgctgttatggtggagaaagtgaatactcccattatagaagatgtaggaatgcataaccatgcaaagagtagtttagt 43305949  T
Q  817 ttctga 822  Q
    ||||||    
T  43305948 ttctga 43305943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 390 - 513
Target Start/End: Original strand, 27266326 - 27266449
Alignment:
Q  390 atcagatgtaacagaaaaactatctaccttgaggtggtgaacatcactcccacagattctaccagctttcattttaattctgacatcattgggttcttca 489  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  27266326 atcagatgtaatagaaaaactatctaccttgaggtagtgaacatgactcccacagattccaccagcattcattttaattctgacatcattgggtccttca 27266425  T
Q  490 aacatacaaaaatagttatatcag 513  Q
    |||||||||||||||| |||||||    
T  27266426 aacatacaaaaatagtgatatcag 27266449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 617 - 753
Target Start/End: Complemental strand, 41828400 - 41828264
Alignment:
Q  617 atgggaaaccaaagattgcttttcttgttgggagcaattgctgttaattgtttactgtttcagtcaattttggttccacatgaaaatgaaagagctcctt 716  Q
    ||||||||||||||||| ||||| ||  | |||||| ||||| ||||||||||| |||||||  |||||||||||||| |  ||||||||||||||||||    
T  41828400 atgggaaaccaaagattacttttttttgttggagcacttgctcttaattgtttattgtttcaaccaattttggttccatacaaaaatgaaagagctcctt 41828301  T
Q  717 gatcttcttctgatttcaataatgctcttatggtgga 753  Q
    | ||||||||||||||| |||||| | ||||||||||    
T  41828300 ggtcttcttctgatttccataatgttgttatggtgga 41828264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 44356374 - 44356516
Alignment:
Q  19 agagtaacttcatcaatcatgacatcccccaattgagtccattcaatgtctgtgctattttgaactgtatatacttctaagtgctctccaagtaatccaa 118  Q
    |||||||||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||  |||||||||||| ||| |||||||||||||||||||    
T  44356374 agagtaacttcatcaatcgtgatattccccaattgagtccatttaatgtctgtgctattttgttctgtatatacttttaattgctctccaagtaatccaa 44356473  T
Q  119 cc--tatagtgcacaagattgatgaaaaagttgacacacatat 159  Q
    ||  |||||| ||||||||||||||||||||||||||||||||    
T  44356474 cctatatagtacacaagattgatgaaaaagttgacacacatat 44356516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 7e-42; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 378 - 500
Target Start/End: Complemental strand, 22991168 - 22991045
Alignment:
Q  378 attgaatattgca-tcagatgtaacagaaaaactatctaccttgaggtggtgaacatcactcccacagattctaccagctttcattttaattctgacatc 476  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||||||||||||||||    
T  22991168 attgaatattgaaatcagatgtaacagaaaaactatctaccttgaggtagtgaacatcactcccacagattccaacagccttcattttaattctgacatc 22991069  T
Q  477 attgggttcttcaaacatacaaaa 500  Q
    || |||| ||||||||||||||||    
T  22991068 atggggtccttcaaacatacaaaa 22991045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 378 - 500
Target Start/End: Original strand, 23797230 - 23797353
Alignment:
Q  378 attgaatattgca-tcagatgtaacagaaaaactatctaccttgaggtggtgaacatcactcccacagattctaccagctttcattttaattctgacatc 476  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||||||||||||||||    
T  23797230 attgaatattgaaatcagatgtaacagaaaaactatctaccttgaggtagtgaacatcactcccacagattccaacagccttcattttaattctgacatc 23797329  T
Q  477 attgggttcttcaaacatacaaaa 500  Q
    || |||| ||||||||||||||||    
T  23797330 atggggtccttcaaacatacaaaa 23797353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 350
Target Start/End: Complemental strand, 22991265 - 22991200
Alignment:
Q  285 ggaagtagcccttgaatcaaaattacagattatgtaggaaaccatttggagaaaaaaatcatcaaa 350  Q
    |||| |||||||| |||||||||  |||||||||||||||| |||||||||||||| |||||||||    
T  22991265 ggaaatagcccttaaatcaaaatcgcagattatgtaggaaatcatttggagaaaaagatcatcaaa 22991200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 23797133 - 23797198
Alignment:
Q  285 ggaagtagcccttgaatcaaaattacagattatgtaggaaaccatttggagaaaaaaatcatcaaa 350  Q
    |||| |||||||| |||||||||  |||||||||||||||| |||||||||||||| |||||||||    
T  23797133 ggaaatagcccttaaatcaaaatcgcagattatgtaggaaatcatttggagaaaaagatcatcaaa 23797198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 658 - 733
Target Start/End: Complemental strand, 32606622 - 32606547
Alignment:
Q  658 tgttaattgtttactgtttcagtcaattttggttccacatgaaaatgaaagagctccttgatcttcttctgatttc 733  Q
    ||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  32606622 tgttaattgtttactgtttcaatcaattttggttccatacgaaaatgaaagagctccttgatcttcttctgatttc 32606547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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