View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20031_low_12 (Length: 304)
Name: NF20031_low_12
Description: NF20031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20031_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 51577773 - 51577608
Alignment:
| Q |
7 |
catcatcacaattcacaacactttttcactcacacccaaacaaggaaccaaaaccccacttcacacgcacagataaagtttcaaactttaccccccaccc |
106 |
Q |
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| T |
51577773 |
catcatcacaattcacaacactttttcactcac--ccaaacaagtaaccaaaaccccacttcacacgcacagataaagtttcaaactttaccccccaccc |
51577676 |
T |
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| Q |
107 |
cactttcttaaaacttcttccaataatcttcttccgttttaatttattataataatcatcaaatcaaat |
175 |
Q |
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| T |
51577675 |
cac-ttcttaaaatttcttccaataatcttcttccgttttaatttattataataatcatcaaatcaaat |
51577608 |
T |
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Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 51577566 - 51577484
Alignment:
| Q |
206 |
atgtcgataagtttcaacaacaagaaacaccaccaaccgctgcaaaacaccatgcctatccacccaatcaacgacattccttc |
288 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51577566 |
atgtcgttaagtttcaacaacaagaaacaccaccaaccgctgcaaaacaccatgcctatccacccaatcaacgacattccttc |
51577484 |
T |
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