View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20031_low_15 (Length: 262)
Name: NF20031_low_15
Description: NF20031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20031_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 2963731 - 2963487
Alignment:
| Q |
1 |
aaaatattcaaatagttacaaatgattaataattgcattgtttttgttggatgaataaaaacttaaaattaaaataatgatgcatcttttaaaaagcaat |
100 |
Q |
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| T |
2963731 |
aaaatattcaaatagttacaaatgattaatgattgcattgtttttgattgatgaataaaaaattaaaattaaaataatgctgcatctattaaaaagcaat |
2963632 |
T |
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| Q |
101 |
gagggtaaggtcgaaaacgagtcgagtcgagttgaatcttgttcagttcggttcgacttgataagaattagatcgactcaaaacttaaattcgttaaaaa |
200 |
Q |
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| T |
2963631 |
gagggtaaggtcggaaacgagtcgagtc-----gaatcttgttcagttcgactcgacttgataagaattagatcgactcaaaacttaaattcgttaaaaa |
2963537 |
T |
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| Q |
201 |
cnnnnnnnnctagttcgaattcgactcaattcaaactcatgaaccgttca |
250 |
Q |
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| T |
2963536 |
ctttttttattagttcaaattcgactcaattcaaactcatgaaccgttca |
2963487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 2972103 - 2971922
Alignment:
| Q |
1 |
aaaatattcaaatagttacaaatgattaataattgcattgtttttgttggatgaataaaaacttaaaattaaaataatgatgcatcttttaaaaagcaat |
100 |
Q |
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|||||||||||||||||| ||||||||||| |||| ||||||||| |||||| ||||||| | |||| ||||||||| |||||||||||||||||| | |
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| T |
2972103 |
aaaatattcaaatagttataaatgattaatgattgtattgttttttatggatggataaaaaatataaat-aaaataatgctgcatcttttaaaaagcatt |
2972005 |
T |
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| Q |
101 |
gagggtaaggtcgaaaacgagtcgagtcgagttgaatcttgttcagttcggttcgacttgataagaattagatcgactcaaaacttaa |
188 |
Q |
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| T |
2972004 |
gagggtagggtcggaaatgagtcgagtcgag-----ccttgtttagttcggctcgacttgataagatttaaatcgacttgaaacttaa |
2971922 |
T |
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