View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20031_low_3 (Length: 647)
Name: NF20031_low_3
Description: NF20031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20031_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 601; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 15 - 631
Target Start/End: Complemental strand, 24229623 - 24229007
Alignment:
| Q |
15 |
caaaggaaagaaaagcatcaacagtagcatacttaacctgatcccaatcaagcattggattatcccacctactcctcgtaatcctcgacggcttctcaac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24229623 |
caaaggaaagaaaagcatcaacagtagcatacttaacctgatcccaatcaagcattggattatcccacctactcctcgtaatcctcgacggcttctcaac |
24229524 |
T |
|
| Q |
115 |
aatcttcccaagaacacgttccgccaatgtcttaatcccacttctcaacaaatcacgatcctctaacacatcagcagcaaggttacgcagatcaacataa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24229523 |
aatcttcccaagaacacgttccgccaatgtcttaatcccacttctcaacaaatcacgatcctctaacacatcagcagcaaggttacgcagatcaacataa |
24229424 |
T |
|
| Q |
215 |
ttcgcaacggtgaggttgtagtcttctataagcttctcgatgtcggattcaattccgacgccgacgaatctgttgttagggttagagaggaaggtgaaga |
314 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24229423 |
ttcgcaacggtgaggttgtagtcttctataatcttctcgatgtcggattcaattccgacgccgacgaatctgttgttagggttagagaggaaggtgaaga |
24229324 |
T |
|
| Q |
315 |
ggaaagtggggatggagggggaatggatgagttggaatataagacagcggttgttggtgtagagttgaagagtggcggctgggttggattggccgcgttg |
414 |
Q |
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| T |
24229323 |
ggaaagtggggatggagggggaatggatgagttggaatataagacagcggttgttggtgtagagttgaagagtggcggctgggttggattggccgcgttg |
24229224 |
T |
|
| Q |
415 |
ggagtttggacgccattcgatgtcaaggccgatgattgcgggggagagggattgggtttcgaggagccaagattcgacgtggataggggaacaggtgagg |
514 |
Q |
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| T |
24229223 |
ggagtttggacgccattcgatgtcaaggccgatgattgcgggggagagggattgggtttcgaggagccaagattcgacgtggatgggggaacaggtgagg |
24229124 |
T |
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| Q |
515 |
agggtttggattgtgagggtggtgtcgatggtgatggagtaggtgttgtgggtgtcgtaggggaggtggttgtcgaagagggtgatgttgaagggtgatg |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24229123 |
agggtttggattgtgagggtggtgtcgatggtgatggagtaggtgttgtgggtgtcgtaggggaggtggttgtcgaagagggtgatgttgaagggtgatg |
24229024 |
T |
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| Q |
615 |
gtgtgagatttgggttg |
631 |
Q |
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||||| | ||||||||| |
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| T |
24229023 |
gtgtggggtttgggttg |
24229007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 514 - 618
Target Start/End: Original strand, 24225003 - 24225107
Alignment:
| Q |
514 |
gagggtttggattgtgagggtggtgtcgatggtgatggagtaggtgttgtgggtgtcgtaggggaggtggttgtcgaagagggtgatgttgaagggtgat |
613 |
Q |
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||||| ||||||||||| ||||| ||||| ||||||||||||||||| |||||| |||| ||||||| |||||||| || |||||| |||| ||| | | |
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| T |
24225003 |
gagggattggattgtgaaggtggagtcgaaggtgatggagtaggtgtcgtgggtatcgtgagggaggttgttgtcgatgatggtgattttgatgggagtt |
24225102 |
T |
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| Q |
614 |
ggtgt |
618 |
Q |
| |
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||||| |
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| T |
24225103 |
ggtgt |
24225107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 24215680 - 24215791
Alignment:
| Q |
15 |
caaaggaaagaaaagcatcaacagtagcatacttaacctgatcccaatcaagcattggattatcccacctactcctcgtaatcctcgacggcttctcaac |
114 |
Q |
| |
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|||| |||| ||||||||||||||| ||||||||||||||||| | ||||| || |||||||||||||| | | ||| | |||||||||||| |
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| T |
24215680 |
caaatgaaacaaaagcatcaacagttgcatacttaacctgatcagcactaagcaactgactatcccacctactcatagaaatgttatgcggcttctcaac |
24215779 |
T |
|
| Q |
115 |
aatcttcccaag |
126 |
Q |
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|||||||||||| |
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| T |
24215780 |
aatcttcccaag |
24215791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 24224495 - 24224537
Alignment:
| Q |
15 |
caaaggaaagaaaagcatcaacagtagcatacttaacctgatc |
57 |
Q |
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|||| |||| ||||||||||||||||||||| ||||||||||| |
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| T |
24224495 |
caaacgaaacaaaagcatcaacagtagcatatttaacctgatc |
24224537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 24209982 - 24210075
Alignment:
| Q |
71 |
ggattatcccacctactcctcgtaatcctcgacggcttctcaacaatcttcccaagaacacgttccgccaatgtcttaatcccacttctcaaca |
164 |
Q |
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|||||||||||||||||| ||| || || |||||||| |||| | |||| ||||||||||||||| ||||| |||||| ||| ||||||| |
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| T |
24209982 |
ggattatcccacctactcatcgaaacccaatgcggcttcttaacagttttcctaagaacacgttccgctaatgtattaatctcacccctcaaca |
24210075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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