View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20031_low_4 (Length: 598)
Name: NF20031_low_4
Description: NF20031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20031_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 14 - 588
Target Start/End: Original strand, 18664965 - 18665539
Alignment:
| Q |
14 |
ctttcttcacttcaccctccttgcaaaattcatctagtttcttaagtttatctgtatctgaagcagagttttgattatctgaatttcgagcctgctgcca |
113 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664965 |
ctttcttcacttcaccctccttgcaaacttcatctagtttcttaagtttatctgtatctgaagcagagttttgattatctgaatttcgagcctgctgcca |
18665064 |
T |
|
| Q |
114 |
acgaccaaggttttgagtaaggttcccatgatgtccctgataatctataggcctaagtaaactatgtgaattgggatacttcatcgtttctccggattct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18665065 |
acgaccaaggttttgagtaaggttcccatgatgtccctgataatctataggcctaagtaaactatgtgaattgggatacttcatcgtttctccggattct |
18665164 |
T |
|
| Q |
214 |
agtctccaattatgtctctcaaaagaaccataaggatgcatcccaaagccccttgaattatcaacacctaccccaactttatgttgcattttgaagtttc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18665165 |
agtctccaattatgtctctcaaaagaaccataaggatgcatcccaaagccccttgaattatcaacacctaccccaactttatgttgcattttgaagtttc |
18665264 |
T |
|
| Q |
314 |
tttgaccaaagtcctcattgacacttccattatgctctgccaaattattttgaactacattctgggtgatattattatttacatgccctccatgtgcagt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18665265 |
tttgaccaaagtcctcattgacacttccattatgctctgccaaattattttgaactacattctgagtgatattattatttacatgccctccatgtgcagt |
18665364 |
T |
|
| Q |
414 |
ttgaccagatccataataaattcgctctgaactagcatgattattcggaaaatatccacttgcattttgctgatgaaacctaggacgattttgatggtaa |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18665365 |
ttgaccagatccataataaattcgctctgaactagcatgattattcggaaaatatccacttgcattttgctgatgaaacctaggacaattttgatggtaa |
18665464 |
T |
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| Q |
514 |
tccgaagaatcattagcttgataatcccacctttcagcagcggtggaaatattccttgatgtattagaccctttg |
588 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18665465 |
tccgaagaatcattagcttgataatcccacctttcagcagcggtggaaatattccttgatgtattagaccctttg |
18665539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 14 - 588
Target Start/End: Complemental strand, 15078863 - 15078289
Alignment:
| Q |
14 |
ctttcttcacttcaccctccttgcaaaattcatctagtttcttaagtttatctgtatctgaagcagagttttgattatctgaatttcgagcctgctgcca |
113 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15078863 |
ctttcttcacttcaccctccttgcaaatttcatctagtttcttaagtttatctgtatctgaagcagagttttgattatctgaatttcgagcctgctgcca |
15078764 |
T |
|
| Q |
114 |
acgaccaaggttttgagtaaggttcccatgatgtccctgataatctataggcctaagtaaactatgtgaattgggatacttcatcgtttctccggattct |
213 |
Q |
| |
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||||||| ||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15078763 |
acgaccacggttttgagtaaggttctcatgatgtccctgatactctataggcgtaagtaaactatgtgaattgggatacttcatcgtttctccggattct |
15078664 |
T |
|
| Q |
214 |
agtctccaattatgtctctcaaaagaaccataaggatgcatcccaaagccccttgaattatcaacacctaccccaactttatgttgcattttgaagtttc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15078663 |
agtctccaattatgtctctcaaaagaaccataaggatgcatcccaaagccccttgaattatcaacacctaccccaactttatgttgcattttgaagtttc |
15078564 |
T |
|
| Q |
314 |
tttgaccaaagtcctcattgacacttccattatgctctgccaaattattttgaactacattctgggtgatattattatttacatgccctccatgtgcagt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15078563 |
tttgaccaaagtcctcattgacacttccattatgctctgccaaattattttgaactacattctgggtgatattattatttacatgccctccatgcgcagt |
15078464 |
T |
|
| Q |
414 |
ttgaccagatccataataaattcgctctgaactagcatgattattcggaaaatatccacttgcattttgctgatgaaacctaggacgattttgatggtaa |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15078463 |
ttgaccagatccataataaattcgctctgaactagcatgattattcggaaaatatccacttgcattttgctgatgaaacctaggacgattttgctggtaa |
15078364 |
T |
|
| Q |
514 |
tccgaagaatcattagcttgataatcccacctttcagcagcggtggaaatattccttgatgtattagaccctttg |
588 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15078363 |
tccgaagaatcattagcttgataatcccacctttcagcagcggtggaaatatcccttgatgtattagaccctttg |
15078289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 342
Target Start/End: Complemental strand, 22272684 - 22272633
Alignment:
| Q |
291 |
tttatgttgcattttgaagtttctttgaccaaagtcctcattgacacttcca |
342 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| |||| |||||||||||||| |
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|
| T |
22272684 |
tttatgttgcattttcaagttgctttgaccagagtctgcattgacacttcca |
22272633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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