View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20031_low_9 (Length: 381)
Name: NF20031_low_9
Description: NF20031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20031_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 3933337 - 3933698
Alignment:
| Q |
1 |
caactgttggaaaaatagtgcgaattgacatggatggtgccctcaatgtaagtacagttccataactactacgaaacaggacctaaatagtaatagaccc |
100 |
Q |
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| T |
3933337 |
caactgttggaaaaatagtgcgaattgacatggatggtgccctcaatgtaagtacagttccataactactacgaaacaggacctaaatagtaatagaccc |
3933436 |
T |
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| Q |
101 |
ggattggtattaaatcttataaagccatataaatattgcctaggtaatagcatatatgtgggggaattttgccactttatatggctaaaatcaaattttt |
200 |
Q |
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| T |
3933437 |
ggattggtattaaatcttataaagctatataaatattgcctaggtaatagcatatatgtgggggaattttgccactttatatggctaaaatcaaagtttt |
3933536 |
T |
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| Q |
201 |
gcaaatgctaattagtatttgatttcatcttgaggttacatcagacaatatgtgttttaaatgttttttgtttgtaggcgagggtcactggtaggcagag |
300 |
Q |
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| T |
3933537 |
gcaaatgctaattagtatttgatttcatcttgaggttacatcagaca--atgtgttttaaatgttttttgtttgtaggcgagggtcactggtaggcagag |
3933634 |
T |
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| Q |
301 |
cttgtggaaagtttctcctggagatgcagaacgacttccaggatttgaggttggagattgggta |
364 |
Q |
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| T |
3933635 |
cttgtggaaagtttctcctggagatgcagaacgacttccaggatttgaggttggagattgggta |
3933698 |
T |
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