View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20032_high_2 (Length: 372)
Name: NF20032_high_2
Description: NF20032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20032_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 10 - 357
Target Start/End: Complemental strand, 35453187 - 35452821
Alignment:
| Q |
10 |
aagaatatattgactgggcttctaatattacgatggacttgggcttaatgagttcaaagttaaactatacttttagtattgcttttttggccccctcaat |
109 |
Q |
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| T |
35453187 |
aagaaaatattgactgggcttctaatattacgatggacttgggcttaatgagttcaaagttaaactatacttttaggattgcttttttggccccctcaat |
35453088 |
T |
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| Q |
110 |
gtcta-------------aaaatttgatagataactttcgaagaccagtttcttttagtttaacaccatcaaaatacatttggaaatcaatttacaacgt |
196 |
Q |
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| T |
35453087 |
gtctatcaagcacctctaaaaatttgatagataactttcgaagaccagtttcttttagtttaacaccatcaaaatacatttggaaatcaatttacaacgt |
35452988 |
T |
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| Q |
197 |
gttagtacatcaaatttttatattgcagttaaatttgtaaaaaactacaaacaaatatggtcaatccaactgcca------ttgccattagattgcaata |
290 |
Q |
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| T |
35452987 |
gttagtacatcaaatttttatattgcagttaaatttgtaaaaaactactaacaaatatggtcaatccaactgccattgcggttgccattagattgcaata |
35452888 |
T |
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| Q |
291 |
ttgtgatcattatatgtaaatcttaggcaaagatttacatctaatatggctaactagtagttaaatt |
357 |
Q |
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| T |
35452887 |
ttgtgattattatatgtaaatcttaggcaaagatttacatctaatatggctaactagtagttaaatt |
35452821 |
T |
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