View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20032_low_3 (Length: 311)
Name: NF20032_low_3
Description: NF20032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20032_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 8937739 - 8937460
Alignment:
| Q |
17 |
taaaccattgctgaatcttccagttggttgatttccaccaccaaagtctttaccataaggtggaaagttgcacttgaacacagtgttgatgatgtagttg |
116 |
Q |
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| T |
8937739 |
taaaccattgctgaatcttccagttggttgatttccaccaccaaagtctttaccataaggtggaaagttgcacttgaacacagtgttgatgatgtagttg |
8937640 |
T |
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| Q |
117 |
ttattacctgagtcaactattgagtcaccaaaggcaatgaatgctggaactgtttcattgtttggtagattcacagcattaccataatgtagagagacaa |
216 |
Q |
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| T |
8937639 |
ttattacctgagtcaactatagagtcaccaaaggcaatgaatgctggaactgtttcattgtttggtagattcacagcattaccataatgtagagagacaa |
8937540 |
T |
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| Q |
217 |
ggattatagcaagagagaaaagagtgacaagaggtgattgaaaaagaaggttttgaaagagcaacttcatgtttttgtag |
296 |
Q |
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| T |
8937539 |
ggattatagcaagagagaaaagagtgacaagaggtgattgaaaaagaaggttttgaaagagcaacttcatgtttttgtag |
8937460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 8945924 - 8945648
Alignment:
| Q |
17 |
taaaccattgctgaatcttccagttggttgatttccaccaccaaagtctttaccataaggtggaaagttgcacttgaacacagtgttgatgatgtagttg |
116 |
Q |
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|||||||||||| || ||||| |||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| |||| ||| |||||| |
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| T |
8945924 |
taaaccattgctaaaccttcctgttggttgatttccactaccaaagtctctaccataaggtagaaagttgcacttgacataagtgccaatg---tagttg |
8945828 |
T |
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| Q |
117 |
ttattacctgagtcaactattgagtcaccaaaggcaatgaatgctggaactgtttcattgtttggtagattcacagcattaccataatgtagagagacaa |
216 |
Q |
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| T |
8945827 |
ttattacctgagtcaactatagagtctccaaacacaatgagtgctggaattgtttcattgtttggtagattcacagcattaccacaatgtagagagataa |
8945728 |
T |
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| Q |
217 |
ggattatagcaagagagaaaagagtgacaagaggtgattgaaaaagaaggttttgaaagagcaacttcatgtttttgtag |
296 |
Q |
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| T |
8945727 |
agattgtagtaagagagaaaagattaacaagaggtgattgaaaaagaagattttgaaatagaaatttcatgtttttgtag |
8945648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 31797598 - 31797675
Alignment:
| Q |
106 |
tgatgtagttgttattacctgagtcaactattgagtcaccaaaggcaatgaatgctggaactgtttcattgtttggta |
183 |
Q |
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|||| ||||||||||| |||| |||||||| ||||||||||| ||| | |||||| ||||||||||||||||||| |
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| T |
31797598 |
tgatatagttgttatttcctggatcaactatagagtcaccaaatacaaaaactgctggcactgtttcattgtttggta |
31797675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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