View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20032_low_4 (Length: 265)

Name: NF20032_low_4
Description: NF20032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20032_low_4
NF20032_low_4
[»] chr5 (35 HSPs)
chr5 (45-250)||(10736848-10737053)
chr5 (42-241)||(4124754-4124954)
chr5 (41-246)||(1103882-1104087)
chr5 (39-147)||(10735758-10735866)
chr5 (40-216)||(13519469-13519649)
chr5 (42-224)||(35047417-35047598)
chr5 (40-123)||(35081474-35081557)
chr5 (130-238)||(9219262-9219370)
chr5 (41-125)||(28702566-28702650)
chr5 (40-147)||(11797546-11797653)
chr5 (41-123)||(4127290-4127372)
chr5 (39-126)||(1102613-1102700)
chr5 (42-147)||(41144531-41144636)
chr5 (157-238)||(8188125-8188206)
chr5 (41-242)||(11796566-11796765)
chr5 (40-125)||(41143236-41143321)
chr5 (157-241)||(224512-224596)
chr5 (154-223)||(10978216-10978285)
chr5 (161-221)||(5975870-5975930)
chr5 (148-221)||(1273190-1273263)
chr5 (157-225)||(18695585-18695653)
chr5 (61-100)||(31267768-31267807)
chr5 (42-113)||(42642057-42642128)
chr5 (105-231)||(36897998-36898126)
chr5 (41-101)||(8523805-8523865)
chr5 (40-108)||(23334019-23334087)
chr5 (161-228)||(9170824-9170891)
chr5 (56-99)||(22308860-22308903)
chr5 (148-221)||(22812328-22812402)
chr5 (42-108)||(23325910-23325976)
chr5 (65-106)||(41805852-41805893)
chr5 (169-225)||(326467-326523)
chr5 (64-108)||(12374610-12374654)
chr5 (157-225)||(21389081-21389149)
chr5 (58-114)||(36899026-36899082)
[»] chr7 (35 HSPs)
chr7 (39-241)||(43442682-43442884)
chr7 (41-240)||(10955842-10956041)
chr7 (41-217)||(666723-666899)
chr7 (43-125)||(10957189-10957271)
chr7 (79-250)||(29589181-29589351)
chr7 (156-241)||(17288164-17288249)
chr7 (38-141)||(669407-669510)
chr7 (42-237)||(26146630-26146825)
chr7 (80-250)||(3330728-3330897)
chr7 (40-125)||(26135637-26135722)
chr7 (157-242)||(28326311-28326396)
chr7 (60-221)||(35296757-35296918)
chr7 (42-221)||(41329409-41329588)
chr7 (157-241)||(45721688-45721772)
chr7 (157-242)||(41515106-41515191)
chr7 (43-147)||(43441345-43441449)
chr7 (41-147)||(2414746-2414848)
chr7 (79-147)||(35295734-35295802)
chr7 (79-221)||(32653498-32653640)
chr7 (86-202)||(44376646-44376762)
chr7 (86-202)||(44385513-44385629)
chr7 (41-111)||(8426935-8427005)
chr7 (39-136)||(39981312-39981409)
chr7 (70-147)||(44372755-44372832)
chr7 (70-147)||(44381611-44381688)
chr7 (40-123)||(41328215-41328298)
chr7 (42-101)||(44554825-44554884)
chr7 (79-122)||(48312691-48312734)
chr7 (56-94)||(3413544-3413582)
chr7 (79-125)||(15992170-15992216)
chr7 (70-147)||(9081419-9081496)
chr7 (157-238)||(14206783-14206863)
chr7 (157-238)||(14215473-14215553)
chr7 (148-189)||(43931840-43931881)
chr7 (56-96)||(11501192-11501232)
[»] chr4 (44 HSPs)
chr4 (45-246)||(36846474-36846674)
chr4 (42-240)||(35348795-35348993)
chr4 (41-236)||(26631143-26631338)
chr4 (42-246)||(39056423-39056627)
chr4 (39-225)||(1521120-1521315)
chr4 (70-241)||(44499904-44500074)
chr4 (36-246)||(56156927-56157136)
chr4 (42-147)||(26629789-26629894)
chr4 (39-221)||(8363328-8363510)
chr4 (40-241)||(52137422-52137622)
chr4 (157-242)||(46795947-46796032)
chr4 (160-241)||(47667291-47667372)
chr4 (42-126)||(1519809-1519893)
chr4 (157-241)||(29665496-29665580)
chr4 (41-125)||(35350143-35350227)
chr4 (157-246)||(3528300-3528389)
chr4 (40-125)||(39057802-39057887)
chr4 (45-141)||(26425784-26425880)
chr4 (57-141)||(26491430-26491514)
chr4 (157-250)||(38554039-38554132)
chr4 (79-238)||(49895075-49895235)
chr4 (160-242)||(56001190-56001271)
chr4 (40-217)||(26495118-26495295)
chr4 (39-221)||(36244706-36244888)
chr4 (42-147)||(36845407-36845513)
chr4 (162-238)||(41348354-41348430)
chr4 (183-240)||(26376446-26376503)
chr4 (34-123)||(26496346-26496435)
chr4 (157-225)||(307743-307811)
chr4 (158-238)||(20827446-20827528)
chr4 (56-162)||(37106248-37106354)
chr4 (70-147)||(44498486-44498563)
chr4 (157-225)||(43418143-43418211)
chr4 (157-225)||(43895555-43895623)
chr4 (79-152)||(56085382-56085455)
chr4 (39-147)||(56157509-56157617)
chr4 (79-126)||(4872265-4872312)
chr4 (41-108)||(20625556-20625623)
chr4 (183-241)||(4872151-4872208)
chr4 (42-108)||(20620137-20620203)
chr4 (183-241)||(56086471-56086528)
chr4 (34-147)||(36243509-36243622)
chr4 (161-217)||(2292264-2292320)
chr4 (44-92)||(9791840-9791888)
[»] chr8 (45 HSPs)
chr8 (41-237)||(43203203-43203399)
chr8 (42-238)||(31844366-31844562)
chr8 (85-246)||(42793740-42793901)
chr8 (39-246)||(24306039-24306246)
chr8 (70-241)||(24191403-24191573)
chr8 (40-147)||(38697864-38697971)
chr8 (43-126)||(43202095-43202178)
chr8 (42-147)||(31845807-31845912)
chr8 (157-241)||(39516419-39516503)
chr8 (42-147)||(28291293-28291398)
chr8 (40-241)||(9853563-9853763)
chr8 (157-241)||(38095-38178)
chr8 (39-140)||(9854899-9855000)
chr8 (157-230)||(7770107-7770180)
chr8 (84-241)||(38697196-38697353)
chr8 (157-229)||(7777784-7777856)
chr8 (70-187)||(10667995-10668112)
chr8 (65-124)||(24305074-24305133)
chr8 (42-129)||(28291396-28291483)
chr8 (157-229)||(7795876-7795949)
chr8 (161-238)||(22621059-22621136)
chr8 (201-241)||(24068472-24068512)
chr8 (157-230)||(7815153-7815227)
chr8 (70-147)||(24192676-24192753)
chr8 (148-225)||(39323888-39323965)
chr8 (79-147)||(10669458-10669526)
chr8 (157-225)||(13514803-13514871)
chr8 (157-225)||(13604336-13604404)
chr8 (65-125)||(17455068-17455128)
chr8 (79-147)||(20180687-20180755)
chr8 (157-217)||(36757166-36757226)
chr8 (79-126)||(7844746-7844793)
chr8 (157-224)||(8397197-8397264)
chr8 (148-235)||(16362520-16362607)
chr8 (157-238)||(36939958-36940039)
chr8 (144-225)||(45395953-45396034)
chr8 (79-147)||(39174740-39174808)
chr8 (41-101)||(42878875-42878935)
chr8 (167-234)||(2075495-2075562)
chr8 (148-219)||(37274988-37275059)
chr8 (39-117)||(19793100-19793178)
chr8 (79-141)||(39173151-39173213)
chr8 (182-223)||(21671287-21671328)
chr8 (79-147)||(35799486-35799554)
chr8 (79-147)||(42362763-42362831)
[»] chr1 (35 HSPs)
chr1 (42-246)||(48528810-48529015)
chr1 (41-225)||(12667210-12667394)
chr1 (42-225)||(26287711-26287902)
chr1 (79-242)||(40533522-40533685)
chr1 (37-125)||(48527527-48527615)
chr1 (42-241)||(5611724-5611932)
chr1 (45-147)||(7306268-7306370)
chr1 (43-221)||(51446782-51446960)
chr1 (42-147)||(26286410-26286515)
chr1 (41-221)||(14479454-14479634)
chr1 (40-147)||(5613098-5613205)
chr1 (42-136)||(7304810-7304904)
chr1 (41-147)||(12665788-12665894)
chr1 (79-238)||(6047954-6048111)
chr1 (79-235)||(52076566-52076722)
chr1 (135-238)||(24516422-24516525)
chr1 (168-238)||(26803141-26803211)
chr1 (161-238)||(40110577-40110654)
chr1 (36-126)||(18818968-18819058)
chr1 (39-147)||(28050316-28050424)
chr1 (39-126)||(18821773-18821860)
chr1 (157-223)||(51217728-51217794)
chr1 (79-242)||(28051527-28051688)
chr1 (42-101)||(48492727-48492786)
chr1 (41-123)||(51445587-51445669)
chr1 (58-123)||(9482471-9482536)
chr1 (42-123)||(14478264-14478345)
chr1 (167-234)||(19194824-19194891)
chr1 (160-238)||(26055010-26055088)
chr1 (79-152)||(6049432-6049505)
chr1 (36-101)||(14429743-14429808)
chr1 (161-238)||(33941431-33941508)
chr1 (159-211)||(9210073-9210125)
chr1 (39-99)||(15746827-15746887)
chr1 (157-225)||(50679759-50679827)
[»] scaffold0219 (2 HSPs)
scaffold0219 (39-246)||(6890-7096)
scaffold0219 (41-151)||(8199-8309)
[»] chr6 (16 HSPs)
chr6 (80-238)||(18242232-18242390)
chr6 (42-234)||(138132-138324)
chr6 (42-234)||(146153-146345)
chr6 (43-151)||(11968486-11968594)
chr6 (41-125)||(30231475-30231559)
chr6 (39-125)||(30232941-30233027)
chr6 (40-125)||(136623-136708)
chr6 (40-119)||(35037129-35037208)
chr6 (45-122)||(11967249-11967326)
chr6 (167-241)||(30232826-30232899)
chr6 (174-217)||(11968410-11968453)
chr6 (159-234)||(29675589-29675664)
chr6 (35-140)||(11722777-11722882)
chr6 (148-225)||(18773755-18773832)
chr6 (186-248)||(27438929-27438991)
chr6 (39-111)||(8695122-8695194)
[»] chr3 (33 HSPs)
chr3 (42-147)||(37416451-37416556)
chr3 (80-238)||(10301740-10301898)
chr3 (130-241)||(7271513-7271624)
chr3 (45-147)||(37414996-37415098)
chr3 (157-246)||(48253043-48253132)
chr3 (160-241)||(47766873-47766954)
chr3 (157-241)||(53809415-53809499)
chr3 (157-241)||(10339911-10339995)
chr3 (41-221)||(49380893-49381073)
chr3 (42-221)||(13621897-13622076)
chr3 (79-147)||(14745213-14745281)
chr3 (79-221)||(14744098-14744240)
chr3 (149-225)||(26797421-26797497)
chr3 (81-189)||(34123241-34123348)
chr3 (157-241)||(54750365-54750448)
chr3 (148-225)||(17345411-17345488)
chr3 (157-238)||(32980377-32980458)
chr3 (70-126)||(7270349-7270405)
chr3 (161-238)||(20486122-20486199)
chr3 (157-238)||(25585758-25585839)
chr3 (194-234)||(21515410-21515450)
chr3 (162-226)||(45422102-45422166)
chr3 (167-234)||(143104-143171)
chr3 (79-126)||(10338773-10338820)
chr3 (159-226)||(40896682-40896749)
chr3 (56-98)||(3817325-3817367)
chr3 (157-211)||(7921595-7921649)
chr3 (148-238)||(11220583-11220673)
chr3 (40-140)||(13620916-13621016)
chr3 (39-108)||(40241759-40241827)
chr3 (70-99)||(53612897-53612926)
chr3 (167-227)||(5122433-5122493)
chr3 (71-99)||(10730912-10730940)
[»] chr2 (31 HSPs)
chr2 (58-246)||(19397544-19397732)
chr2 (42-238)||(1147747-1147943)
chr2 (42-238)||(4919825-4920020)
chr2 (42-133)||(1309396-1309487)
chr2 (40-242)||(28610018-28610219)
chr2 (41-125)||(1149223-1149307)
chr2 (42-147)||(1310681-1310786)
chr2 (84-241)||(45699569-45699725)
chr2 (34-142)||(19398818-19398926)
chr2 (38-95)||(8320776-8320833)
chr2 (41-125)||(40559144-40559228)
chr2 (79-225)||(16289812-16289958)
chr2 (41-102)||(102414-102475)
chr2 (159-238)||(2717703-2717783)
chr2 (80-147)||(23233709-23233776)
chr2 (42-125)||(40556938-40557021)
chr2 (42-140)||(25559280-25559378)
chr2 (148-221)||(6707027-6707100)
chr2 (154-223)||(9473989-9474058)
chr2 (40-140)||(28611272-28611372)
chr2 (39-138)||(25561681-25561780)
chr2 (148-225)||(26205985-26206062)
chr2 (36-101)||(35903500-35903565)
chr2 (38-102)||(101991-102055)
chr2 (157-225)||(4830613-4830681)
chr2 (45-140)||(8321263-8321358)
chr2 (79-126)||(23231575-23231622)
chr2 (157-223)||(4513693-4513759)
chr2 (41-123)||(4921095-4921177)
chr2 (161-238)||(25569883-25569960)
chr2 (160-237)||(42596673-42596750)
[»] scaffold0114 (1 HSPs)
scaffold0114 (42-242)||(38538-38737)
[»] scaffold0092 (1 HSPs)
scaffold0092 (45-139)||(39825-39919)
[»] scaffold0084 (1 HSPs)
scaffold0084 (148-225)||(11807-11884)
[»] scaffold0687 (1 HSPs)
scaffold0687 (157-230)||(6496-6570)
[»] scaffold0141 (1 HSPs)
scaffold0141 (45-111)||(9860-9926)
[»] scaffold0046 (1 HSPs)
scaffold0046 (157-225)||(24753-24821)
[»] scaffold2071 (1 HSPs)
scaffold2071 (42-101)||(740-799)
[»] scaffold0148 (1 HSPs)
scaffold0148 (56-102)||(15908-15954)
[»] scaffold0290 (1 HSPs)
scaffold0290 (157-238)||(8489-8570)
[»] scaffold0121 (1 HSPs)
scaffold0121 (80-147)||(4450-4517)
[»] scaffold0011 (1 HSPs)
scaffold0011 (38-101)||(127427-127490)
[»] scaffold0003 (1 HSPs)
scaffold0003 (186-248)||(48371-48433)
[»] scaffold0019 (2 HSPs)
scaffold0019 (38-99)||(61845-61906)
scaffold0019 (56-96)||(63195-63235)


Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 45 - 250
Target Start/End: Complemental strand, 10737053 - 10736848
Alignment:
Q  45 ttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaat 144  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10737053 ttaattggacttttggtcccctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaat 10736954  T
Q  145 caatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcgac 244  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  10736953 caatttggtcccctccgttaactttttaatgtctaaaatttttgatttgattttaaccatttgattgaatgtccattgtatctaatagtgaaccgtcaac 10736854  T
Q  245 acttaa 250  Q
    ||||||    
T  10736853 acttaa 10736848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 42 - 241
Target Start/End: Original strand, 4124754 - 4124954
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaa-tttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgt 140  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| || |||||||||| ||||||||||| ||||||||||||||    
T  4124754 ggcttaattggacttttggtcctctaagtaaatttcttgttttcattttggttccataattcataaaatcaacgttttggtcccttttgttttgctccgt 4124853  T
Q  141 taatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgt 240  Q
    || | ||||||| ||||| | |||| | |||||||| ||||| ||||||| |||||||||||||||||||| || |||||||||| ||||||||||||||    
T  4124854 tagttaatttggtccccttcattagttgtttaatgtttaaaaattttgatttaattttaaccatttgattgtatatccattgtatttaatagtgaaccgt 4124953  T
Q  241 c 241  Q
    |    
T  4124954 c 4124954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 41 - 246
Target Start/End: Complemental strand, 1104087 - 1103882
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgt 140  Q
    ||||||||||||||||||||||| ||||||||||| |||||  |||||| |||||||||||||||||||||||||||  || ||||||||||| ||| ||    
T  1104087 aggcttaattggacttttggtcccctaagtaatttgttgttaacattttagtcccataactcgtaaaatcaacatttcagttcctcttgtttttctctgt 1103988  T
Q  141 taatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgt 240  Q
    ||  || ||||| |||||||||||| ||| |||| |||||||   ||||| | |||||||||||| |||| |||| ||||||||| ||||||| ||||||    
T  1103987 tagccagtttggtcccctccgttagttttataatatctaaaaaaattgatttgattttaaccattagattacatgcccattgtatttaatagttaaccgt 1103888  T
Q  241 cgacac 246  Q
    | ||||    
T  1103887 caacac 1103882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 10735758 - 10735866
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctcc 138  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10735758 ttaggcttaattggacttttggtcccctaagtaattacttgttttcattttggtcccataactcgtaaaatcaacgttttggtccctcttgttttgctcc 10735857  T
Q  139 gttaatcaa 147  Q
    |||| ||||    
T  10735858 gttagtcaa 10735866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 216
Target Start/End: Original strand, 13519469 - 13519649
Alignment:
Q  40 taggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccg 139  Q
    |||||||||||||||||||| ||| |||| ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  13519469 taggcttaattggacttttgttcc-ctaactaatttcttgtttacattttagtcccataactcgaaaaatcaacattttggtccttcttgttttgctccg 13519567  T
Q  140 ttaatcaatttggccccctccg-----ttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgt 216  Q
    ||  |||| |||  ||| ||||     |||| |||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  13519568 tttgtcaaattgatcccttccgttagtttagttttttaatgtctaaaacttttgatatgattttaaccatttgattgcatgt 13519649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 42 - 224
Target Start/End: Original strand, 35047417 - 35047598
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    |||||||||||| ||||| ||| |||||| ||||| |||||||||||||||||||||||||||||||||||| ||   |||||| |||||||||||||||    
T  35047417 ggcttaattggatttttgatcccctaagttatttcgtgttttcattttggtcccataactcgtaaaatcaacgttcaagtcccttttgttttgctccgtt 35047516  T
Q  142 aatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgta 224  Q
    | ||||   ||  || ||| |||| |||||||||  |||| |||||||| ||||||||| |||| ||||||||||||||||||    
T  35047517 agtcaaaaagg-tccatccattagttttttaatgcttaaattttttgatataattttaatcattcgattgcatgtccattgta 35047598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 35081557 - 35081474
Alignment:
Q  40 taggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtcc 123  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||    
T  35081557 taggcttaattggacttttggtcccctaagtaattgtttgttttcattttggtcccataactcgtaaaatcaacgttttggtcc 35081474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 9219262 - 9219370
Alignment:
Q  130 ttttgctccgttaatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaa 229  Q
    ||||||||| ||| ||||||||  |||||||||||| ||||||||||||||||||||| || | ||||||||| ||||||||||||| |||||||| |||    
T  9219262 ttttgctccattagtcaatttgatcccctccgttagttttttaatgtctaaaattttttatttgattttaaccgtttgattgcatgttcattgtatttaa 9219361  T
Q  230 tagtgaacc 238  Q
    |||||||||    
T  9219362 tagtgaacc 9219370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 28702566 - 28702650
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccct 125  Q
    |||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  28702566 aggcttaattggactttttgtcccctaagtaatttgttgttttcattttggtcccataactcgtaaaattaacgttttggtccct 28702650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 11797653 - 11797546
Alignment:
Q  40 taggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccg 139  Q
    ||||||||||||||| |||||||| |||| |||||    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  11797653 taggcttaattggacatttggtcccctaaataattatgagtttacattttggtctcataactcgtaaaatcaacattttggtccctcttgtttttctccg 11797554  T
Q  140 ttaatcaa 147  Q
    ||| ||||    
T  11797553 ttagtcaa 11797546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 4127372 - 4127290
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtcc 123  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||    
T  4127372 aggcttaattggacccttggtcctctaagtaatttgttgttttcattttggtcccataactcgtaaaattaacgttttggtcc 4127290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 1102613 - 1102700
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctc 126  Q
    |||||||||||||||||||||||||  ||| |||||| |||||| ||| |||||||||||||||||||||||||||||| ||||||||    
T  1102613 ttaggcttaattggacttttggtcccataactaatttgttgtttacatattggtcccataactcgtaaaatcaacatttaggtccctc 1102700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 41144636 - 41144531
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    |||||||||||| ||||||||| |||| |||||| ||||||||||||||||||||||| |  |||||||||| ||||||||||| |  ||||||||||||    
T  41144636 ggcttaattggatttttggtcccctaattaatttgttgttttcattttggtcccataaattctaaaatcaacgttttggtccctttgattttgctccgtt 41144537  T
Q  142 aatcaa 147  Q
    | ||||    
T  41144536 agtcaa 41144531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 8188206 - 8188125
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    ||||||||| ||||||||||||||||||| |||| | |||||||||||||||||||||||||||| ||| |||| |||||||    
T  8188206 ctccgttagttttttaatgtctaaaatttctgatatgattttaaccatttgattgcatgtccattatatttaatggtgaacc 8188125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 242
Target Start/End: Original strand, 11796566 - 11796765
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgt 140  Q
    |||||||||||||| |||||||| |||| |||||    |||| |||||||||||||||| | ||||||   | |||||||||||| | |||||||||| |    
T  11796566 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcatattttggtccct-tggttttgctccct 11796664  T
Q  141 taatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgt 240  Q
     | |||| |||  ||| |||| ||| |||||||||| ||||| ||||||| | || ||| || |||||||||||||||||| || || ||||||| ||||    
T  11796665 cagtcaaattgatcccatccgctagttttttaatgtttaaaacttttgatatgatattagccgtttgattgcatgtccattatacct-atagtgagccgt 11796763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 41143236 - 41143321
Alignment:
Q  40 taggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccct 125  Q
    |||||||||||||||| ||| |||||||| |||||| ||||||| ||||||||| ||||| |  ||||||||||||||||||||||    
T  41143236 taggcttaattggactcttgatcctctaactaatttgttgtttttattttggtctcataagttctaaaatcaacattttggtccct 41143321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 224596 - 224512
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    ||||||||| ||||||||||||||| |||||||| | | |||||||||||||| ||| || |||||||| |||||||||||||||    
T  224596 ctccgttagttttttaatgtctaaattttttgatatgactttaaccatttgatcgcacgttcattgtatttaatagtgaaccgtc 224512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 10978285 - 10978216
Alignment:
Q  154 cccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgt 223  Q
    |||||||||||| |||||||||| ||| ||||||||| |||||||||||||| ||||||||| |||||||    
T  10978285 cccctccgttagatttttaatgtttaatatttttgatataattttaaccattcgattgcatgcccattgt 10978216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 5975870 - 5975930
Alignment:
Q  161 gttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccatt 221  Q
    ||||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||    
T  5975870 gttagttttttaatgtctaaagtttttgatatgattttaaccatttgattgcatgtccatt 5975930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 1273190 - 1273263
Alignment:
Q  148 tttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccatt 221  Q
    ||||| |||||||||||| |||||||||| ||| ||||||||| | |||| ||||||| ||||||| |||||||    
T  1273190 tttggtcccctccgttagttttttaatgtttaatatttttgatatgatttcaaccattcgattgcaggtccatt 1273263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 18695653 - 18695585
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    ||||||||| |||||||||||||||||||||||| |  ||| |||| |||||||||| || ||||||||    
T  18695653 ctccgttagttttttaatgtctaaaatttttgatatgttttcaaccgtttgattgcaggttcattgtat 18695585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 31267768 - 31267807
Alignment:
Q  61 tcctctaagtaatttcttgttttcattttggtcccataac 100  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  31267768 tcctctaattaatttcttgttttcattttggtcccataac 31267807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 42642128 - 42642057
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaac 113  Q
    ||||||||| ||  ||||||||||||| |||||| |||||||||||||| |||||||| |  ||||||||||    
T  42642128 ggcttaattcgatatttggtcctctaactaatttattgttttcattttgatcccataagttctaaaatcaac 42642057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 36897998 - 36898126
Alignment:
Q  105 aaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagctttttaatgtctaaaattttt--gatctaattttaacc 202  Q
    ||||||||||| |||||||||    ||||| ||||||| |||||||||  | || | |||  ||||||||| ||||||||||   ||| | ||||||||     
T  36897998 aaaatcaacatgttggtcccttaacttttgatccgttattcaatttggttctcttccttaattttttaatgactaaaattttaacgatttgattttaaca 36898097  T
Q  203 atttgattgcatgtccattgtatctaata 231  Q
    ||||||||||||||| ||||||| |||||    
T  36898098 atttgattgcatgtcaattgtatttaata 36898126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 8523865 - 8523805
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataact 101  Q
    ||||||||| || | |||||||| |||| |||||||  |||||||||||||||||||||||    
T  8523865 aggcttaataggtcatttggtcccctaattaatttcaagttttcattttggtcccataact 8523805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 23334087 - 23334019
Alignment:
Q  40 taggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaa 108  Q
    ||||||||||||||| ||||||||||||| |||||    |||| |||||||||||||||| | ||||||    
T  23334087 taggcttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaa 23334019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 9170891 - 9170824
Alignment:
Q  161 gttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatcta 228  Q
    ||||| || ||||||||  | |||||| || | |||||||||||||||||||||||||||| ||||||    
T  9170891 gttagtttcttaatgtcagatattttttatatcattttaaccatttgattgcatgtccattatatcta 9170824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 22308903 - 22308860
Alignment:
Q  56 tttggtcctctaagtaatttcttgttttcattttggtcccataa 99  Q
    |||||||| |||| ||||||| ||||||||||||||||||||||    
T  22308903 tttggtcccctaaataatttcatgttttcattttggtcccataa 22308860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 22812402 - 22812328
Alignment:
Q  148 tttggccccctccgttag-ctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccatt 221  Q
    ||||| ||||||||||||  |||||||||| ||| ||||||||| | |||| ||||||| ||||||| |||||||    
T  22812402 tttggtcccctccgttagtttttttaatgtttaatatttttgatatgatttcaaccattcgattgcaggtccatt 22812328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 23325910 - 23325976
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaa 108  Q
    ||||||||||||| ||||||||||||| |||||    |||| |||||||||||||||| | ||||||    
T  23325910 ggcttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaa 23325976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 41805852 - 41805893
Alignment:
Q  65 ctaagtaatttcttgttttcattttggtcccataactcgtaa 106  Q
    |||| ||||||||||||||||||||| |||||||||| ||||    
T  41805852 ctaactaatttcttgttttcattttgatcccataacttgtaa 41805893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 326467 - 326523
Alignment:
Q  169 tttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    |||||||||||| |||||| || |  |||| |||||||||||||| |||||||||||    
T  326467 tttaatgtctaatattttttatattgttttgaccatttgattgcaggtccattgtat 326523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 12374654 - 12374610
Alignment:
Q  64 tctaagtaatttcttgttttcattttggtcccataactcgtaaaa 108  Q
    ||||| |||||||||||||||||||||||  |||||||| |||||    
T  12374654 tctaactaatttcttgttttcattttggtttcataactcctaaaa 12374610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 21389149 - 21389081
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    ||||||||| ||||||||||||||||||||| || |  ||| |||| |||||||| | || ||||||||    
T  21389149 ctccgttagttttttaatgtctaaaattttttatatgttttcaaccgtttgattgtaggttcattgtat 21389081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 36899082 - 36899026
Alignment:
Q  58 tggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaaca 114  Q
    ||||| ||||| |||||||| ||||||||||| ||| ||||||||  ||||||||||    
T  36899082 tggtcatctaactaatttctagttttcatttttgtctcataactcaaaaaatcaaca 36899026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 39 - 241
Target Start/End: Complemental strand, 43442884 - 43442682
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctcc 138  Q
    ||||| ||||||| ||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43442884 ttaggtttaattgaacttttggtcccctaagtaatttgttgttttcatattggtcccataactcgtaaaatcaacattttggtccctcttgttttgctcc 43442785  T
Q  139 gttaatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    |||| ||||||||| ||||||||||||  |||||||||||||| |||||||| | |||||||| |||||||||||||||| |||||| ||| ||||||||    
T  43442784 gttagtcaatttggtcccctccgttagtcttttaatgtctaaattttttgatttgattttaacaatttgattgcatgtccgttgtatttaacagtgaacc 43442685  T
Q  239 gtc 241  Q
    |||    
T  43442684 gtc 43442682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 41 - 240
Target Start/End: Original strand, 10955842 - 10956041
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgt 140  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||||| | ||||||||  |||||||||| |||| |||||||||||||||||||||    
T  10955842 aggcttaattggacttttggtcccttaagtaatttgttgttttcattttgattccataacttataaaatcaacgttttagtccctcttgttttgctccgt 10955941  T
Q  141 taatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgt 240  Q
    || ||||||| | |||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||  |||||||||  | |||||||| |||||    
T  10955942 tagtcaatttagtcccctccgttagatttttaatgtctaaaatttttgatttgattttaaccatttgattgagtgtccattgcgtttaatagtggaccgt 10956041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 41 - 217
Target Start/End: Original strand, 666723 - 666899
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgt 140  Q
    ||||||||||||| |||| |||| |||| |||||    |||||||||||| || |||||||| |||||| || |||| ||||||||||||||||||||||    
T  666723 aggcttaattggatttttagtcccctaaataattatcagttttcattttgatctcataactcataaaattaatatttcggtccctcttgttttgctccgt 666822  T
Q  141 taatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtc 217  Q
    || ||||||||| ||||||||||||  |||||||||| ||| |||||||| | ||||||||||||| ||||||||||    
T  666823 tagtcaatttggtcccctccgttagtattttaatgtcgaaattttttgatttgattttaaccatttaattgcatgtc 666899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 10957271 - 10957189
Alignment:
Q  43 gcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccct 125  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  10957271 gcttaattggacttttggtcccctaagtaatttgttgttttcattttggtcccataactcgtaaaattaacgttttggtccct 10957189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 79 - 250
Target Start/End: Complemental strand, 29589351 - 29589181
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagctttttaatgtct 178  Q
    |||||||||||||||| |||| || |||||||| ||||||| ||||||   ||||||||||||| | ||||||| | || | ||||| |||||||||| |    
T  29589351 gttttcattttggtccaataagtcttaaaatcatcattttgctccctcaacttttgctccgttatttaatttggtcgccacagttagttttttaatgttt 29589252  T
Q  179 aaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcgacacttaa 250  Q
    |||||||||||| | ||||||||||||||||| ||| |||||| ||| | |||||||| ||||  |||||||    
T  29589251 aaaatttttgatttgattttaaccatttgatttcatatccattatat-ttatagtgaatcgtcatcacttaa 29589181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 17288249 - 17288164
Alignment:
Q  156 cctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    |||||||||| ||||||||||||||| |||||||| | |||||||| ||||||||||||||||||||||| |||||||||||||||    
T  17288249 cctccgttagttttttaatgtctaaattttttgatatgattttaactatttgattgcatgtccattgtatttaatagtgaaccgtc 17288164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 669510 - 669407
Alignment:
Q  38 attaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctc 137  Q
    |||||||||||||||| ||||||||| ||||||||||    ||||||||||||||||||||| ||||||||||||||||| ||||||| || |||||||     
T  669510 attaggcttaattggatttttggtcccctaagtaattatcagttttcattttggtcccataattcgtaaaatcaacatttcggtcccttttattttgctt 669411  T
Q  138 cgtt 141  Q
    ||||    
T  669410 cgtt 669407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 237
Target Start/End: Complemental strand, 26146825 - 26146630
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||||| ||| |||| |  |||||||||  ||| |||||||      |  | |||||    
T  26146825 ggcttaattggacttttggtcccctaactaatttgttgttttcattttgatcctataaattttaaaatcaatgtttcggtcccttacaaatgtcaccgtt 26146726  T
Q  142 aatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaac 237  Q
    | |||| |||  |||||||||||  ||||||||||||||| |||||||| | ||||||||||   ||||||||||||||||||  |||||||||||    
T  26146725 agtcaaattgatcccctccgttatttttttaatgtctaaactttttgatatgattttaaccacccgattgcatgtccattgtagttaatagtgaac 26146630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 250
Target Start/End: Original strand, 3330728 - 3330897
Alignment:
Q  80 ttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagctttttaatgtcta 179  Q
    |||||||||||||| | ||| || |||||||| ||||| ||||||||    ||||||||| || ||||||||| |  |||  |||| || ||||||||||    
T  3330728 ttttcattttggtctcttaagtcttaaaatcaccatttcggtccctcaacatttgctccgctattcaatttggtctactcaattagtttgttaatgtcta 3330827  T
Q  180 aaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcgacacttaa 250  Q
    || |||||||| | ||||||||| ||||||||||||| |||||||||| |||||||||||||  |||||||    
T  3330828 aattttttgatttgattttaaccgtttgattgcatgttcattgtatct-atagtgaaccgtcagcacttaa 3330897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 26135637 - 26135722
Alignment:
Q  40 taggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccct 125  Q
    |||||||||||||||||||||||| |||| ||||||  ||||||||||||||||||||||||  |||||||||| |||||||||||    
T  26135637 taggcttaattggacttttggtcccctaactaatttgatgttttcattttggtcccataacttctaaaatcaacgttttggtccct 26135722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 28326396 - 28326311
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcg 242  Q
    ||||||||| ||||||||||||||| ||||| || | |||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  28326396 ctccgttagttttttaatgtctaaattttttaatatgattttaaccatttgattgcatgtccattatatttaatagtgaaccgtcg 28326311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 221
Target Start/End: Complemental strand, 35296918 - 35296757
Alignment:
Q  60 gtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctc 159  Q
    ||||||||| |||||| | |||| ||||||||||| |||| | ||||||   |||||||||| ||  | |||||||||||||| |||| |||  |  |||    
T  35296918 gtcctctaaataatttgtagtttacattttggtcctataaattgtaaaactcacattttggtacccttggttttgctccgttagtcaaattgatcatctc 35296819  T
Q  160 cgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccatt 221  Q
    |||||  ||||||||||||||| |||||||| | ||||||||| ||||||||||||||||||    
T  35296818 cgttaattttttaatgtctaaattttttgatatgattttaaccgtttgattgcatgtccatt 35296757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 221
Target Start/End: Complemental strand, 41329588 - 41329409
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttg-ttttgctccgt 140  Q
    ||||||||||||| |||||||| |||| |||||    |||| ||||||||||| |||| | ||||||   ||||||||||||| |||| |||| ||||||    
T  41329588 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccc-cttgattttactccgt 41329490  T
Q  141 taatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccatt 221  Q
     | |||| |||  |||||||||||| |||||||||| |||| |||||||| | || |||||| ||||||||||||||||||    
T  41329489 cagtcaaattgatcccctccgttagatttttaatgtttaaattttttgatgtgatattaaccgtttgattgcatgtccatt 41329409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 45721772 - 45721688
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    ||||||||| ||||||||||||||| ||||| || | ||||||||||||||||||||||| |||||||||||||| |||||||||    
T  45721772 ctccgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgcatgttcattgtatctaataatgaaccgtc 45721688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 41515106 - 41515191
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcg 242  Q
    ||||||||  ||||||||||||||| ||||| || | |||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  41515106 ctccgttaattttttaatgtctaaagttttttatatgattttaaccatttgattgcatgtccattatatttaatagtgaaccgtcg 41515191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 147
Target Start/End: Original strand, 43441345 - 43441449
Alignment:
Q  43 gcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtta 142  Q
    ||||| ||||| ||||||||| |||||||| || ||||||||||||||||| |||||||| |||||| || |||||||||||||    ||||||||||||    
T  43441345 gcttagttggatttttggtcccctaagtaaattgttgttttcattttggtctcataactcataaaattaatattttggtccctcagcgtttgctccgtta 43441444  T
Q  143 atcaa 147  Q
    |||||    
T  43441445 atcaa 43441449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 2414746 - 2414848
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgt 140  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||| ||||||   || ||||| |||| ||||||||||| | ||||||||||||    
T  2414746 aggcttaattggacttttggtccctcaagtaatttcttgttttcattttgctcccat---tc-taaaaccaacgttttggtccctttggttttgctccgt 2414841  T
Q  141 taatcaa 147  Q
    || ||||    
T  2414842 tagtcaa 2414848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 35295734 - 35295802
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaa 147  Q
    |||| |||||||||||||||||||||||| ||||| |||| |||||||||||||||||| |||||||||    
T  35295734 gtttacattttggtcccataactcgtaaagtcaacgttttagtccctcttgttttgctcagttaatcaa 35295802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 32653498 - 32653640
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagctttttaatgtct 178  Q
    |||| |||||||||| ||||| | ||||||   |||||| ||||||  | ||||||||||||   |||   ||| ||| |||||||| ||||||||| ||    
T  32653498 gtttacattttggtctcataaattgtaaaactcacatttcggtccccttggttttgctccgtcggtcagaatggtcccatccgttagttttttaatgact 32653597  T
Q  179 aaaatttttgatctaattttaaccatttgattgcatgtccatt 221  Q
    |||||||||||| | ||||||||| ||||||||||||||||||    
T  32653598 aaaatttttgatatcattttaaccgtttgattgcatgtccatt 32653640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 202
Target Start/End: Complemental strand, 44376762 - 44376646
Alignment:
Q  86 ttttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagctttttaatgtctaaaattt 185  Q
    ||||||||||||||||  |||||||| |||||||||||||    ||||||||| ||| |||| ||   || ||||||||| ||||||||||||||| |||    
T  44376762 ttttggtcccataacttttaaaatcatcattttggtcccttaacttttgctccattagtcaaattaatccactccgttagttttttaatgtctaaatttt 44376663  T
Q  186 ttgatctaattttaacc 202  Q
    ||||| | |||||||||    
T  44376662 ttgatttgattttaacc 44376646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 202
Target Start/End: Complemental strand, 44385629 - 44385513
Alignment:
Q  86 ttttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagctttttaatgtctaaaattt 185  Q
    ||||||||||||||||  |||||||| |||||||||||||    ||||||||| ||| |||| ||   || ||||||||| ||||||||||||||| |||    
T  44385629 ttttggtcccataacttttaaaatcatcattttggtcccttaacttttgctccattagtcaaattaatccactccgttagttttttaatgtctaaatttt 44385530  T
Q  186 ttgatctaattttaacc 202  Q
    ||||| | |||||||||    
T  44385529 ttgatttgattttaacc 44385513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 8427005 - 8426935
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatca 111  Q
    |||||||||||||||||| |||| |||| ||||||| ||||||||||||||||  ||| ||||||||||||    
T  8427005 aggcttaattggacttttagtcccctaattaatttcatgttttcattttggtcttatagctcgtaaaatca 8426935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 39981312 - 39981409
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgct 136  Q
    |||||||||||||||| |||| |||||||| |||||    |||| |||||||||||||||| | |||||||  |||||||||||| | | ||||||||    
T  39981312 ttaggcttaattggacatttgatcctctaaataattgtgcgtttacattttggtcccataaattgtaaaattcacattttggtccttttggttttgct 39981409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 44372755 - 44372832
Alignment:
Q  70 taatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaa 147  Q
    |||||||  ||||||||||||||| |||||||| |||||| | ||||||||||||||   ||||||||||||| ||||    
T  44372755 taatttcgagttttcattttggtctcataactcttaaaattatcattttggtccctcgacttttgctccgttattcaa 44372832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 44381611 - 44381688
Alignment:
Q  70 taatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaa 147  Q
    |||||||  ||||||||||||||| |||||||| |||||| | ||||||||||||||   ||||||||||||| ||||    
T  44381611 taatttcgagttttcattttggtctcataactcttaaaattatcattttggtccctcgacttttgctccgttattcaa 44381688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 41328215 - 41328298
Alignment:
Q  40 taggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtcc 123  Q
    ||||||||||||||| ||||||||||||| |||||    |||| |||||||||||||||| | ||||||   ||||||||||||    
T  41328215 taggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 41328298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 44554884 - 44554825
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataact 101  Q
    |||||||||  || ||||||||||||| | |||| |||||||||||||||||||||||||    
T  44554884 ggcttaattaaacctttggtcctctaacttatttgttgttttcattttggtcccataact 44554825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 48312734 - 48312691
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtc 122  Q
    ||||||||||||||||||||| || |||||||| ||||||||||    
T  48312734 gttttcattttggtcccataaatcttaaaatcatcattttggtc 48312691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 3413544 - 3413582
Alignment:
Q  56 tttggtcctctaagtaatttcttgttttcattttggtcc 94  Q
    ||||||||||||| ||||||| |||||||||||||||||    
T  3413544 tttggtcctctaaataatttcgtgttttcattttggtcc 3413582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 15992170 - 15992216
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccct 125  Q
    ||||||||||||||| |||| |||| |||||||||| ||||||||||    
T  15992170 gttttcattttggtctcatagctcgaaaaatcaacactttggtccct 15992216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 9081419 - 9081496
Alignment:
Q  70 taatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaa 147  Q
    |||||||  ||||||||||||||||||||| || |||||||| || |||| ||||||   ||||||||| ||| ||||    
T  9081419 taatttccggttttcattttggtcccataagtcataaaatcatcaatttgctccctcaacttttgctcctttattcaa 9081496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 14206783 - 14206863
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    ||||||||| |||||||| | ||| |||| |||| |||||| ||||||| ||||||| ||||||| |||  |||||||||||    
T  14206783 ctccgttagttttttaat-tgtaacatttctgatataatttcaaccattcgattgcaggtccattatatacaatagtgaacc 14206863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 14215473 - 14215553
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    ||||||||| |||||||| | ||| |||| |||| |||||| ||||||| ||||||| ||||||| |||  |||||||||||    
T  14215473 ctccgttagttttttaat-tgtaacatttctgatataatttcaaccattcgattgcaggtccattatatacaatagtgaacc 14215553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 43931881 - 43931840
Alignment:
Q  148 tttggccccctccgttagctttttaatgtctaaaatttttga 189  Q
    ||||| |||||||||||| |||||||||||||| ||||||||    
T  43931881 tttggtcccctccgttagttttttaatgtctaacatttttga 43931840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 11501192 - 11501232
Alignment:
Q  56 tttggtcctctaagtaatttcttgttttcattttggtccca 96  Q
    ||||||||| ||| ||||||| |||||||||||||||||||    
T  11501192 tttggtcctttaattaatttcatgttttcattttggtccca 11501232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 45 - 246
Target Start/End: Complemental strand, 36846674 - 36846474
Alignment:
Q  45 ttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaat 144  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  36846674 ttaattggacttttggccccctaagtaatttgttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttcgt 36846575  T
Q  145 caatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcgac 244  Q
    |||||||| ||| |||||||| ||||||||||||||| |||||||| | |||||||||||||||||||||||||||| ||| ||| ||||||||||| ||    
T  36846574 caatttggtcccttccgttag-tttttaatgtctaaattttttgatttgattttaaccatttgattgcatgtccattatatttaacagtgaaccgtcaac 36846476  T
Q  245 ac 246  Q
    ||    
T  36846475 ac 36846474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 42 - 240
Target Start/End: Original strand, 35348795 - 35348993
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |||     
T  35348795 ggcttaattggacttttggtcccttaagtaatttgttgttttcattttggtcccataacttgtaaaatcaacgttttagtccctcttgttttgcttcgtc 35348894  T
Q  142 aatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgt 240  Q
    | ||||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||  |||||||||  | |||||||| |||||    
T  35348895 agtcaatttagtcccctccgttagctttttaatgtctaaaatttttgatttgattttaaccatttgattgagtgtccattgcgtttaatagtggaccgt 35348993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 41 - 236
Target Start/End: Complemental strand, 26631338 - 26631143
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgt 140  Q
    ||||||||||||||||||||||| | ||||||||| || |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  26631338 aggcttaattggacttttggtcccccaagtaatttgttattttcattttggtctcataactcgtaaaatcaacattttggttcctcttgttttgctccgt 26631239  T
Q  141 taatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaa 236  Q
    || ||||||||| |||||||||| |   ||||||||||||| |||||||| | |||||||||| ||||||||||||| ||||||| ||| ||||||    
T  26631238 tagtcaatttggtcccctccgtttgtcctttaatgtctaaattttttgatttgattttaaccacttgattgcatgtctattgtatttaacagtgaa 26631143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 39056423 - 39056627
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||||| ||||| | ||||||||||| |||| ||||||||||||||||||||||    
T  39056423 ggcttaattggacttttggtcccttaagtaatttgttgttttcattttggtctcataatttgtaaaatcaacgttttagtccctcttgttttgctccgtt 39056522  T
Q  142 aatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    | ||||||| |  ||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||  |||||||||  | |||||||| ||||||    
T  39056523 agtcaatttagttcccaccgttagctttttaatgtctaaaatttttgatttgattttaaccatttgattgagtgtccattgcgtttaatagtggaccgtc 39056622  T
Q  242 gacac 246  Q
     ||||    
T  39056623 aacac 39056627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 39 - 225
Target Start/End: Complemental strand, 1521315 - 1521120
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctcc 138  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||   |||| ||||    
T  1521315 ttaggcttaattggacttttggtcctctaactaatttgttgttttcattttgatcccataattcgtaaaatcaacattttggtccctcaacttttactcc 1521216  T
Q  139 gttaatcaatttggcccc----------ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    |||| ||||||||| |||          || |||||  |||||||||||| |||||||| || | |||||||||||||||||| ||||||| |||||    
T  1521215 gttagtcaatttggtccctcaacttttacttcgttaattttttaatgtct-aaattttttattttattttaaccatttgattgtatgtccaatgtat 1521120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 70 - 241
Target Start/End: Complemental strand, 44500074 - 44499904
Alignment:
Q  70 taatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagcttt 169  Q
    |||||||  |||||| ||||||||||||||||| |||||||| |||||||||||||    ||||||||||||| |||| |||  || ||||||||| ||     
T  44500074 taatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtcccttaacttttgctccgttagtcaaattgatccactccgttagtttg 44499975  T
Q  170 ttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    |||||||||| | |||||||| | ||||||||| |||||||||||||||||||||||| |||||||||||||    
T  44499974 ttaatgtctatattttttgatttgattttaaccgtttgattgcatgtccattgtatct-atagtgaaccgtc 44499904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 246
Target Start/End: Original strand, 56156927 - 56157136
Alignment:
Q  36 atattaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgc 135  Q
    ||||| ||||||||||||  |||||||| |||| |||||    |||| |||||||||||||||| | ||||||   ||||||||||| |  | |||||||    
T  56156927 atattcggcttaattggatatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtctccttggttttgc 56157026  T
Q  136 tccgttaatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtga 235  Q
    ||||| |||||| ||| ||||||||||||| |||||||||| ||||||||||||| | || ||| || |||| ||||||||||||| || || |||||||    
T  56157027 tccgtcaatcaaattgaccccctccgttagttttttaatgtttaaaatttttgatatgatattagccgtttggttgcatgtccattatacct-atagtga 56157125  T
Q  236 accgtcgacac 246  Q
     ||||||||||    
T  56157126 gccgtcgacac 56157136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 26629789 - 26629894
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    ||||||||||||||||||||||  ||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||    |||||||||||    
T  26629789 ggcttaattggacttttggtcccttaagtaaattgttgttttcattttggtcccataactcataaaatcaacattttggtccctcaacgtttgctccgtt 26629888  T
Q  142 aatcaa 147  Q
    ||||||    
T  26629889 aatcaa 26629894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 39 - 221
Target Start/End: Complemental strand, 8363510 - 8363328
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctcc 138  Q
    |||||||||||||||| |||||||| |||| |||||    |||| ||||||||||| |||| | ||||||   |||||||||||||| | ||||||||||    
T  8363510 ttaggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccctttggttttgctcc 8363411  T
Q  139 gttaatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccatt 221  Q
    |||| |||| |||  |||||||||||| |||||||||| ||||||||||||| | || ||   | ||||||||||||||||||    
T  8363410 gttagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattcgtcgtttgattgcatgtccatt 8363328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 241
Target Start/End: Original strand, 52137422 - 52137622
Alignment:
Q  40 taggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttg-ttttgctcc 138  Q
    ||||||||||||||  ||||||||||||| |||||   ||||| |||||||||||||||| | |||||| |||||||||||||| ||||| |||| ||||    
T  52137422 taggcttaattggatatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttggtcc-tcttggttttactcc 52137520  T
Q  139 gttaatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    ||   |||| ||   |  ||||||||| |||| |||||||||| |||||||| | ||||||||| |||||||||||||||||| || || ||||||||||    
T  52137521 gtcggtcaaattcatcatctccgttagtttttcaatgtctaaattttttgatatgattttaaccgtttgattgcatgtccattata-cttatagtgaacc 52137619  T
Q  239 gtc 241  Q
    |||    
T  52137620 gtc 52137622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 46796032 - 46795947
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcg 242  Q
    ||||||||| ||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46796032 ctccgttagttttttaatgtctaaattttttgatatgattttaaccatttgattgcatgtccattgtatttaatagtgaaccgtcg 46795947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 47667291 - 47667372
Alignment:
Q  160 cgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    |||||| ||||||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47667291 cgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 47667372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 1519809 - 1519893
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctc 126  Q
    |||||||||||||||||||||| |||| |||||| | ||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  1519809 ggcttaattggacttttggtcccctaactaatttgtcgttttcattttggtcccataattcgtaaaatcaacatattggtccctc 1519893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 29665580 - 29665496
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    ||||||||  ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29665580 ctccgttaattttttaatgtctaaattttttgatgtgattttaaccatttgattgcatgtccattgtatctaattgtgaaccgtc 29665496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 35350227 - 35350143
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccct 125  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||| ||| |||||||||||    
T  35350227 aggcttaattggacttttggtcccctaagtaatttgttgttttcattttgatctcataactcgtaaaattaacgttttggtccct 35350143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 3528300 - 3528389
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcgacac 246  Q
    |||| |||| ||||||||||||||  ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3528300 ctccattagttttttaatgtctaattttttttatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcaacac 3528389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 39057887 - 39057802
Alignment:
Q  40 taggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccct 125  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| ||||| |||| |||||||||||||| ||| |||||||||||    
T  39057887 taggcttaattggacttttggtcccctaagtaatttgttgtttttatttttgtcctataactcgtaaaattaacgttttggtccct 39057802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 26425880 - 26425784
Alignment:
Q  45 ttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    |||||| | |||||||||| |||||||||||   |||||||||||||| | ||||||||||||||||| ||||||||| ||||||||||||||||||    
T  26425880 ttaattagtcttttggtcccctaagtaattttcagttttcattttggtacaataactcgtaaaatcaatattttggtctctcttgttttgctccgtt 26425784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 26491430 - 26491514
Alignment:
Q  57 ttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    |||||||||||||||||||   ||||  ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  26491430 ttggtcctctaagtaattttcagtttatattttggtctcataactcgtaaaatcaacattttggtccctcttattttgctccgtt 26491514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 38554039 - 38554132
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcgacacttaa 250  Q
    |||| |||| ||||||||||||||| |||||||| | |||||||||||||||| ||| ||||||||||| |||||||||||||||  |||||||    
T  38554039 ctccattagttttttaatgtctaaattttttgatatgattttaaccatttgatcgcacgtccattgtatttaatagtgaaccgtcatcacttaa 38554132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 238
Target Start/End: Original strand, 49895075 - 49895235
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccc-tcttgttttgctccgttaatcaatttggccccctccgttagctttttaatgtc 177  Q
    ||||||||||||||||||||| |  || ||| | |||||||||||| ||   ||||||||||| | ||||||||| | |  ||||||| || |||||| |    
T  49895075 gttttcattttggtcccataagttctataattatcattttggtcccctcaacttttgctccgtcattcaatttggtctctaccgttagtttcttaatgcc 49895174  T
Q  178 taaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    |||  |||||||| | ||| |||||||||||||||| |||| |||||||||||||||||||    
T  49895175 taatttttttgatttgattctaaccatttgattgcaggtccgttgtatctaatagtgaacc 49895235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 56001271 - 56001190
Alignment:
Q  160 cgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcg 242  Q
    |||||| ||||||||||||||  ||||| || | ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  56001271 cgttagttttttaatgtctaattttttt-atgtgattttaaccatttgattgcatgtccattgtatctaatagtgaatcgtcg 56001190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 217
Target Start/End: Original strand, 26495118 - 26495295
Alignment:
Q  40 taggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccg 139  Q
    |||||||||||| |  |||||||| |||| |||||    |||| ||||||| ||| |||| | ||||||   |||||||||||||  | |||||||||||    
T  26495118 taggcttaattgaatatttggtcccctaaataattatgagtttacattttgctcctataaattgtaaaactcacattttggtccccttggttttgctccg 26495217  T
Q  140 ttaatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtc 217  Q
    | | |||| |||  |||||||||||| |||||||||| ||||||||||||| | || ||| || ||||||||||||||    
T  26495218 tcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagccgtttgattgcatgtc 26495295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 221
Target Start/End: Complemental strand, 36244888 - 36244706
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttg-ttttgctc 137  Q
    |||||||||||||||  |||||||| | || |||||    |||| ||||||| |||||||| | ||||||   ||||||| ||||| |||| ||||||||    
T  36244888 ttaggcttaattggatatttggtccccaaaataattatgagtttacattttgatcccataaattgtaaaactcacatttttgtccc-cttgattttgctc 36244790  T
Q  138 cgttaatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccatt 221  Q
    ||| | |||| |||  |||||||||||| |||||||||| |||||| |||||| | || ||| || ||||||||||||||||||    
T  36244789 cgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatgtttgatatgatattagccgtttgattgcatgtccatt 36244706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 36845407 - 36845513
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatc-aacattttggtccctcttgttttgctccgt 140  Q
    |||||||||||||||||||||  ||| |||| || ||||||||||||| || ||||||||| ||||||| ||||||||||| ||||    ||||||||||    
T  36845407 ggcttaattggacttttggtcacctaggtaaattgttgttttcattttagttccataactcataaaatcaaacattttggttcctcaacgtttgctccgt 36845506  T
Q  141 taatcaa 147  Q
    |||||||    
T  36845507 taatcaa 36845513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 41348354 - 41348430
Alignment:
Q  162 ttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    |||| |||||||||| ||||||||||||| | ||||||| |||||||||||||||||||||||| |||  |||||||    
T  41348354 ttagttttttaatgtataaaatttttgatatgattttaatcatttgattgcatgtccattgtatttaacggtgaacc 41348430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 26376446 - 26376503
Alignment:
Q  183 tttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgt 240  Q
    |||||||| | ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  26376446 tttttgatgtgattttaaccatttgattgcatgtacattgtatctaatagttaaccgt 26376503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 26496435 - 26496346
Alignment:
Q  34 atatattaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtcc 123  Q
    |||| |||||||||||||||| ||||||||||||| |||||   ||||| |||||||||||||||| | ||||||   ||||||||||||    
T  26496435 atattttaggcttaattggacatttggtcctctaactaattatgtgtttacattttggtcccataaattgtaaaactcacattttggtcc 26496346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 307811 - 307743
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    ||||||| | |||||||||| |||| |||||||| | ||||||||||| ||||||||||||||||||||    
T  307811 ctccgttggttttttaatgtttaaattttttgatatgattttaaccatatgattgcatgtccattgtat 307743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 20827528 - 20827446
Alignment:
Q  158 tccgttagctttttaatgtctaaaattttt--gatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    |||||||||||||||||||  || ||||||  ||| |||||||||||||||||||||| || |||| |||| |||||||||||    
T  20827528 tccgttagctttttaatgttcaatatttttctgatataattttaaccatttgattgcaagttcattatatccaatagtgaacc 20827446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 37106354 - 37106248
Alignment:
Q  56 tttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccc 155  Q
    |||||||| |||| |||||| ||||||| ||||||||||||||| |  ||||||||||  |||||||||| |  ||||||||||| | ||||| ||| ||    
T  37106354 tttggtcccctaactaatttgttgtttttattttggtcccataagttctaaaatcaacgatttggtccctttgcttttgctccgtcagtcaatatggtcc 37106255  T
Q  156 cctccgt 162  Q
    | |||||    
T  37106254 cttccgt 37106248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 44498486 - 44498563
Alignment:
Q  70 taatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaa 147  Q
    |||||||  |||||| ||||||||||||||||| |||||||| ||||||||||||||   |||||||| |||| ||||    
T  44498486 taatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtccctcaacttttgctctgttattcaa 44498563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 43418143 - 43418211
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    |||||||||  ||||||||||||| ||||||||| | |||| ||||||||||||||| |||||| ||||    
T  43418143 ctccgttagtattttaatgtctaatatttttgatttgatttcaaccatttgattgcaagtccatcgtat 43418211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 43895623 - 43895555
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    ||||||||  |||||||||||||| ||||||||| ||||||||||||||  |||||||| | |||||||    
T  43895623 ctccgttaattttttaatgtctaatatttttgatgtaattttaaccattcaattgcatgactattgtat 43895555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 56085382 - 56085455
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttgg 152  Q
    ||||||||||||||| ||||| || |||||||| ||||||||||||||    |||||| ||||| |||||||||    
T  56085382 gttttcattttggtctcataagtcttaaaatcatcattttggtccctcaatgtttgcttcgttattcaatttgg 56085455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 56157617 - 56157509
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctcc 138  Q
    |||||||||||||||  ||||||||||||| |||||    |||| |||||||||  ||||| | ||||||   |||||||||||||| | ||||||||||    
T  56157617 ttaggcttaattggatatttggtcctctaaataattatgcgtttacattttggtttcataaattgtaaaactcacattttggtccctttggttttgctcc 56157518  T
Q  139 gttaatcaa 147  Q
     ||| ||||    
T  56157517 attagtcaa 56157509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 4872312 - 4872265
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctc 126  Q
    ||||||||||||||||||||| || |||||||| || |||||||||||    
T  4872312 gttttcattttggtcccataagtcttaaaatcatcaatttggtccctc 4872265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 20625623 - 20625556
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaa 108  Q
    |||||||||||||| ||||||||||||| |||||    |||| |||||||||||||||| | ||||||    
T  20625623 aggcttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaa 20625556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 4872208 - 4872151
Alignment:
Q  183 tttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    |||||||| | |||||||||||| ||| | ||||||||||||||||| |||||||||||    
T  4872208 tttttgatttcattttaaccattcgatcgaatgtccattgtatctaa-agtgaaccgtc 4872151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 20620137 - 20620203
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaa 108  Q
    ||||||||||||| ||||||||||||| |||||    |||| |||||||||||||||| | ||||||    
T  20620137 ggcttaattggacctttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaa 20620203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 56086528 - 56086471
Alignment:
Q  183 tttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    |||||||| | |||||||||||| ||||| ||||||||||||||| |||||||| ||||    
T  56086528 tttttgatttgattttaaccattcgattgaatgtccattgtatct-atagtgaatcgtc 56086471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 36243509 - 36243622
Alignment:
Q  34 atatattaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgtttt 133  Q
    |||| |||| ||||||||||| |||||||| |||| |||||    |||| ||||||||||| |||| | ||||||   |||||||||||||  | |||||    
T  36243509 atattttagacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccccttagtttt 36243608  T
Q  134 gctccgttaatcaa 147  Q
    |||| |||| ||||    
T  36243609 gctctgttagtcaa 36243622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 2292264 - 2292320
Alignment:
Q  161 gttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtc 217  Q
    ||||| ||||||||| |||| ||||||||| |||||| ||||||  |||||||||||    
T  2292264 gttagttttttaatgactaatatttttgatataatttcaaccatcagattgcatgtc 2292320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 9791888 - 9791840
Alignment:
Q  44 cttaattggacttttggtcctctaagtaatttcttgttttcattttggt 92  Q
    |||||||| |||||||||||||||| | |||| ||||||||| ||||||    
T  9791888 cttaattgaacttttggtcctctaatttatttgttgttttcaatttggt 9791840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 8e-67; HSPs: 45)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 41 - 237
Target Start/End: Complemental strand, 43203399 - 43203203
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgt 140  Q
    |||||||||||||||||||||||  ||| |||||| || ||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||    
T  43203399 aggcttaattggacttttggtccattaaataatttgttattttcattttggtcccataactcgtaaaatcaacatttccgtccctcttattttgctccgt 43203300  T
Q  141 taatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaac 237  Q
     | ||||||||| |||||||||||| ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| ||| |||||||    
T  43203299 cagtcaatttggtcccctccgttagttttttaatgtctaaattttttgatttaattttaaacatttgattgcatgtccattgtatttaaaagtgaac 43203203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 42 - 238
Target Start/End: Original strand, 31844366 - 31844562
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    ||||||||||||||||||||||   ||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  31844366 ggcttaattggacttttggtccctaaagtaatttgttgttttcattttagtcccgtaactcgtaaaattaacattttggtccctcttgttttgctccgtt 31844465  T
Q  142 aatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    | ||||||||| |||||||||| |   |||||| ||||||||||||||| | |||||||||| ||||||||||||| ||||||  ||| ||||||||    
T  31844466 agtcaatttggtcccctccgtttgtcctttaatttctaaaatttttgatttgattttaaccacttgattgcatgtctattgtaattaacagtgaacc 31844562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 85 - 246
Target Start/End: Original strand, 42793740 - 42793901
Alignment:
Q  85 attttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagctttttaatgtctaaaatt 184  Q
    ||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| ||||   || |||||| ||||  |||||||||||||||| |    
T  42793740 attttggtcccataaattgtaaaattaacattttggtccctcttgttttgctccgttagtcaaaaaggtcccctctgttaattttttaatgtctaaaact 42793839  T
Q  185 tttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcgacac 246  Q
    |||||| | |||||||||||| ||||||||||||||||||  |||||||||||| |||||||    
T  42793840 tttgatatgattttaaccattggattgcatgtccattgtaattaatagtgaaccatcgacac 42793901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 39 - 246
Target Start/End: Complemental strand, 24306246 - 24306039
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctcc 138  Q
    ||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |     ||||| ||    
T  24306246 ttaggcttaataggacttttggttccctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaatattttggtcctttaacgtttgcccc 24306147  T
Q  139 gttaatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    |||| | ||   || ||   ||||||| ||||||||| |||||  ||||||| ||||||||||||||| |||| || |||||||||| |||||||||| |    
T  24306146 gttagttaaaaaggtccatgccgttagttttttaatgcctaaatattttgatttaattttaaccatttaattggatctccattgtatttaatagtgaatc 24306047  T
Q  239 gtcgacac 246  Q
    ||| ||||    
T  24306046 gtcaacac 24306039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 70 - 241
Target Start/End: Original strand, 24191403 - 24191573
Alignment:
Q  70 taatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagcttt 169  Q
    |||||||  |||||| ||||||||||||||||| |||||||| |||||||||| ||    |||||||| |||| |||| |||  || ||||||||| ||     
T  24191403 taatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtctcttaacttttgctctgttactcaaattgatccactccgttagtttg 24191502  T
Q  170 ttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    |||||||||||| |||||||| | ||||||||| |||||||||||||||||||||||| |||||||||||||    
T  24191503 ttaatgtctaaattttttgatttgattttaaccgtttgattgcatgtccattgtatct-atagtgaaccgtc 24191573  T

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Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 38697864 - 38697971
Alignment:
Q  40 taggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccg 139  Q
    ||||||||||||  |||||||||| |||||||||||  | ||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  38697864 taggcttaattgatcttttggtcccctaagtaattttctatttacattttggttccataacttgtaaaatcaacattttggtccctcttgttttgctccg 38697963  T
Q  140 ttaatcaa 147  Q
    ||| ||||    
T  38697964 ttagtcaa 38697971  T

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Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 43202095 - 43202178
Alignment:
Q  43 gcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctc 126  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43202095 gcttaattggacttttgatcccctaagtaatttgttgttttcattttagtcccataactcgtaaaatcaacattttggtccctc 43202178  T

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Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 31845912 - 31845807
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    |||||||||||| |||||||||  ||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||    |||||||||||    
T  31845912 ggcttaattggagttttggtcccttaagtaaattgttgttttcattttggtcccataactcataaaatcaacattttggtccctcaacgtttgctccgtt 31845813  T
Q  142 aatcaa 147  Q
    ||||||    
T  31845812 aatcaa 31845807  T

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Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 39516503 - 39516419
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    ||||||||| ||||||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39516503 ctccgttagttttttaatgtctaaattttttcatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 39516419  T

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Target: chr8; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 28291293 - 28291398
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    |||||||||||| ||||||||| ||||||||||    ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||    
T  28291293 ggcttaattggatttttggtcccctaagtaattatcagttttcattttggtcccataattcgtaaaatcaacatttcggtccctcttattttgcttcgtt 28291392  T
Q  142 aatcaa 147  Q
    | ||||    
T  28291393 agtcaa 28291398  T

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Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 241
Target Start/End: Original strand, 9853563 - 9853763
Alignment:
Q  40 taggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccg 139  Q
    |||||||||||| || || | |||| ||| |||||   |||||  ||||||||||||||| | ||||||  || ||||||||| |    |||||||||||    
T  9853563 taggcttaattgaacattagctcctttaaataattatatgtttatattttggtcccataaattgtaaaactaatattttggtctcctgggttttgctccg 9853662  T
Q  140 ttaatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccg 239  Q
    | | |||| |||  |||||||||||| |||||||| |||||| |||||||| ||||||||||| ||||||||||| |||||| || || |||||||||||    
T  9853663 tcagtcaaattgatcccctccgttagttttttaatatctaaattttttgatataattttaaccgtttgattgcatatccattatacct-atagtgaaccg 9853761  T
Q  240 tc 241  Q
    ||    
T  9853762 tc 9853763  T

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Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 38095 - 38178
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    ||||||||| ||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||| ||| |||||||||||    
T  38095 ctccgttag-tttttaatgtctaaattttttgatatgattttaaccatttaattgcatgtccattgtatttaacagtgaaccgtc 38178  T

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Target: chr8; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 9855000 - 9854899
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttg-ttttgctc 137  Q
    |||||||||||||||| ||||||||||||| |||||   ||||| |||||||||||||||| | |||||||| |||||||||| ||||||| ||||||||    
T  9855000 ttaggcttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttggt-cctcttgattttgctc 9854902  T
Q  138 cgt 140  Q
    |||    
T  9854901 cgt 9854899  T

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Target: chr8; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 7770107 - 7770180
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaat 230  Q
    ||||||||| ||||||||||||||| ||||| || | |||||||||||||||||| ||||||||||||||||||    
T  7770107 ctccgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgtatgtccattgtatctaat 7770180  T

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Target: chr8; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 241
Target Start/End: Original strand, 38697196 - 38697353
Alignment:
Q  84 cattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagctttttaatgtctaaaat 183  Q
    |||||||||| ||||| |  ||||| |||||||||||||||| || ||||||||| | | ||||   || |||||||||||   |||||||||||||||     
T  38697196 cattttggtctcataaattataaaaccaacattttggtcccttttattttgctccctcagtcaaaaaggtcccctccgttactattttaatgtctaaaac 38697295  T
Q  184 ttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    ||||||| | | |||||||||| ||||  ||||||||||| | |||| ||||||||||    
T  38697296 ttttgatatgaatttaaccattagattatatgtccattgtttgtaatggtgaaccgtc 38697353  T

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Target: chr8; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 7777784 - 7777856
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaa 229  Q
    ||||||||| ||||||||||||||| ||||| || | |||||||||||||||||| |||||||||||||||||    
T  7777784 ctccgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgtatgtccattgtatctaa 7777856  T

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Target: chr8; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 187
Target Start/End: Original strand, 10667995 - 10668112
Alignment:
Q  70 taatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagcttt 169  Q
    |||||||  ||||||||||||||||||||| |  |||||||| ||||||||||||||    ||||||| |||| ||||||||| | | |||||| | |||    
T  10667995 taatttcgagttttcattttggtcccataaattttaaaatcagcattttggtccctcaacatttgctctgttagtcaatttggtcacatccgttggtttt 10668094  T
Q  170 ttaatgtctaaaattttt 187  Q
    |||||||||||| |||||    
T  10668095 ttaatgtctaaatttttt 10668112  T

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Target: chr8; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 24305074 - 24305133
Alignment:
Q  65 ctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccc 124  Q
    |||||||||| ||||||||||||||||| | |||||| ||||||||||||||||||||||    
T  24305074 ctaagtaattccttgttttcattttggttctataactagtaaaatcaacattttggtccc 24305133  T

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Target: chr8; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 28291483 - 28291396
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttg 129  Q
    |||||||||||| |||| |||| |||| |||||    ||||||| ||||||||||||||||||||||| ||||||| |||||||||||    
T  28291483 ggcttaattggatttttagtcccctaaataattatcagttttcactttggtcccataactcgtaaaattaacatttcggtccctcttg 28291396  T

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Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 7795876 - 7795949
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttg-atctaattttaaccatttgattgcatgtccattgtatctaa 229  Q
    ||||||||| ||||||||||||||| |||||  || | |||||||||||||||||| |||||||||||||||||    
T  7795876 ctccgttagttttttaatgtctaaattttttttatgtgattttaaccatttgattgtatgtccattgtatctaa 7795949  T

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Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 22621136 - 22621059
Alignment:
Q  161 gttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    ||||| |||||||||| ||||||| ||||| | ||||||| |||||||||||||||||||||||| |||  |||||||    
T  22621136 gttagttttttaatgtataaaattcttgatatgattttaatcatttgattgcatgtccattgtatttaacggtgaacc 22621059  T

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Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 24068472 - 24068512
Alignment:
Q  201 ccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24068472 ccatttgattgcatgtccattgtatctaatagtgaaccgtc 24068512  T

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Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 7815153 - 7815227
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttg-atctaattttaaccatttgattgcatgtccattgtatctaat 230  Q
    ||||||||| ||||||||||||||| |||||  || | |||||||||||||||||  ||||||||||||||||||    
T  7815153 ctccgttagttttttaatgtctaaattttttttatgtgattttaaccatttgattctatgtccattgtatctaat 7815227  T

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Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 24192753 - 24192676
Alignment:
Q  70 taatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaa 147  Q
    |||||||  |||||| ||||||||||||||||| |||||||| |||||||||| |||   |||| |||||||||||||    
T  24192753 taatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtctctcaacttttactccgttaatcaa 24192676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 39323888 - 39323965
Alignment:
Q  148 tttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    ||||| || ||||||||| |||| ||  ||||| ||||||||| |||||||||||||| ||||||||||| |||||||    
T  39323888 tttggtcctctccgttagtttttcaagatctaatatttttgatataattttaaccattagattgcatgtctattgtat 39323965  T

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Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 10669526 - 10669458
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaa 147  Q
    ||||||||||||||||||||| || |||||||||||||||||| ||||    |||||||||||| ||||    
T  10669526 gttttcattttggtcccataaatcttaaaatcaacattttggtacctcaacgtttgctccgttattcaa 10669458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 13514871 - 13514803
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    ||||||||| ||||||||| ||||  |||||||| |||||| ||||||| ||||||||||| |||||||    
T  13514871 ctccgttagttttttaatgactaatgtttttgatataatttaaaccattcgattgcatgtctattgtat 13514803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 13604404 - 13604336
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    ||||||||| ||||||||| ||||  |||||||| |||||| ||||||| ||||||||||| |||||||    
T  13604404 ctccgttagttttttaatgactaatgtttttgatataatttaaaccattcgattgcatgtctattgtat 13604336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 17455068 - 17455128
Alignment:
Q  65 ctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccct 125  Q
    |||| |||||| ||||||||||||||||| ||||| | ||||||||||| |||||||||||    
T  17455068 ctaactaattttttgttttcattttggtcacataatttgtaaaatcaactttttggtccct 17455128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 20180755 - 20180687
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaa 147  Q
    ||||||||||||||| |||||||| |||||| | ||||||||||||||   ||||||||||||| ||||    
T  20180755 gttttcattttggtctcataactcttaaaattatcattttggtccctcgacttttgctccgttattcaa 20180687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 36757226 - 36757166
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtc 217  Q
    |||| |||| ||||||||||||||| |||||||| | ||||||||||||| ||||||||||    
T  36757226 ctccattagttttttaatgtctaaattttttgatatgattttaaccatttaattgcatgtc 36757166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 7844746 - 7844793
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctc 126  Q
    ||||||||||||||||||||| || |||||||| ||||||||||||||    
T  7844746 gttttcattttggtcccataagtcttaaaatcatcattttggtccctc 7844793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 8397264 - 8397197
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgta 224  Q
    ||||||||| ||| |||||  ||| ||||||||| |||||| ||||||||||||||| ||||||||||    
T  8397264 ctccgttagttttataatgattaatatttttgatataatttcaaccatttgattgcaggtccattgta 8397197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 16362520 - 16362607
Alignment:
Q  148 tttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtga 235  Q
    ||||| || ||||||||| |||||||||||||| ||||||||| | |||| |||| || ||||||| || |||||||| ||| |||||    
T  16362520 tttggtcctctccgttagttttttaatgtctaatatttttgatatgatttcaaccgttcgattgcaggtacattgtatataacagtga 16362607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 36940039 - 36939958
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    ||||||||  |||||||| ||||| | ||||||| |  ||| ||||||| ||||||| ||||||||||| ||||||||||||    
T  36940039 ctccgttaattttttaatatctaataattttgatatggtttcaaccattcgattgcaggtccattgtatataatagtgaacc 36939958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 45396034 - 45395953
Alignment:
Q  144 tcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    |||| |||| || ||||||||| || ||||||||| | |||||| ||   ||||||||| ||||||||||||||||||||||    
T  45396034 tcaaattggtccactccgttagtttcttaatgtctgatattttttatacgattttaaccgtttgattgcatgtccattgtat 45395953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 39174808 - 39174740
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaa 147  Q
    |||||||||||||||| |||| |  |||||||| ||||||||||||||   ||||||||||||| ||||    
T  39174808 gttttcattttggtcctataagttttaaaatcatcattttggtccctcaacttttgctccgttattcaa 39174740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 42878935 - 42878875
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataact 101  Q
    ||||||||| || | |||||||| |||| |||||||  |||||||||||||||||||||||    
T  42878935 aggcttaataggtcatttggtcccctaattaatttcaagttttcattttggtcccataact 42878875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 2075495 - 2075562
Alignment:
Q  167 tttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtg 234  Q
    |||||||||| ||| || | |||| | |||||||||| ||||||||| || |||||||||||||||||    
T  2075495 tttttaatgtataatatgtatgatgtgattttaaccacttgattgcaggttcattgtatctaatagtg 2075562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 37274988 - 37275059
Alignment:
Q  148 tttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtcca 219  Q
    ||||| || ||||||||| |||||||||| ||| |||| |||| | |||| ||||||| |||||||||||||    
T  37274988 tttggtcctctccgttagttttttaatgtataacatttctgatatgatttcaaccattcgattgcatgtcca 37275059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 19793178 - 19793100
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattt 117  Q
    |||||||||||| || ||||||||   |||||||||     ||||||||||| |||||||| |||||||||||||||||    
T  19793178 ttaggcttaattagatttttggtctcttaagtaattatcaattttcattttgatcccataattcgtaaaatcaacattt 19793100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 39173151 - 39173213
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    |||||||||||||||| |||| || |||||||  ||||||||||||||   ||||||||||||    
T  39173151 gttttcattttggtcctataagtcttaaaatcgtcattttggtccctcaacttttgctccgtt 39173213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 21671328 - 21671287
Alignment:
Q  182 atttttgatctaattttaaccatttgattgcatgtccattgt 223  Q
    ||||||||| |||||| ||||||||||||||||||| |||||    
T  21671328 atttttgatataatttcaaccatttgattgcatgtctattgt 21671287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 35799486 - 35799554
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaa 147  Q
    |||||||||||||||  |||| || |||||| | ||||||||||||||   ||||||||||||| ||||    
T  35799486 gttttcattttggtcttataagtcttaaaattatcattttggtccctcaacttttgctccgttattcaa 35799554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 42362831 - 42362763
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaa 147  Q
    |||||||||||||| | |||||||| |||||||| | ||||||| |||   ||||||||||||| ||||    
T  42362831 gttttcattttggttctataactcgaaaaatcaatactttggtcactcaacttttgctccgttattcaa 42362763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 48529015 - 48528810
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    |||||||||||||||||||||| | ||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||    
T  48529015 ggcttaattggacttttggtcccccaagtaatttgttgtttacattttggtcccataactcgtaaaatcaacattttagtccctcttatttttctccgtt 48528916  T
Q  142 aatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaatttt-aaccatttgattgcatgtccattgtatctaatagtgaaccgt 240  Q
    | ||||||||| ||| |||||||| |||||||| ||||||| ||||||| | ||||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  48528915 agtcaatttggtcccatccgttagttttttaatatctaaaacttttgatttgattttaaaccattagattgcatgtccattgtatttaatagtgaaccgt 48528816  T
Q  241 cgacac 246  Q
    | ||||    
T  48528815 caacac 48528810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 41 - 225
Target Start/End: Complemental strand, 12667394 - 12667210
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgt 140  Q
    ||||||||||||| |||| ||||||||| |||||    |||||||||||||||| | || ||||||||| ||||||| ||||||||||||||||||||||    
T  12667394 aggcttaattggatttttagtcctctaaataattatcagttttcattttggtcctagaattcgtaaaattaacatttcggtccctcttgttttgctccgt 12667295  T
Q  141 taatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    || |||| |||| |||||||||||| ||||||||||| ||| |||||||| | ||||||| |||||||||||||||| |||||||    
T  12667294 tagtcaacttggtcccctccgttagttttttaatgtcgaaattttttgatttgattttaatcatttgattgcatgtctattgtat 12667210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 225
Target Start/End: Complemental strand, 26287902 - 26287711
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||   |||| |||||||    
T  26287902 ggcttaattggacttttggtcctctaactaatttgttgttttcattttggtcccataattcgtaaaatcaacattttggtccctcaacttttactccgtt 26287803  T
Q  142 aatcaatttggccc---------cctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    | ||||||||| ||          ||||||||  |||||||||||| |||||||| || | |||||||||||||||||| ||||||| |||||    
T  26287802 agtcaatttggtcctcaacttttactccgttaattttttaatgtct-aaattttttatttgattttaaccatttgattgtatgtccaatgtat 26287711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 79 - 242
Target Start/End: Complemental strand, 40533685 - 40533522
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagctttttaatgtct 178  Q
    |||| ||||||||| |||||| | |||||| |||||||||||||||||| | |||||||||||| ||||   || |||||||||||  ||||||||||||    
T  40533685 gtttacattttggttccataaattgtaaaaccaacattttggtccctctcgctttgctccgttagtcaaaaaggtcccctccgttaattttttaatgtct 40533586  T
Q  179 aaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcg 242  Q
    |||| ||||||| | |||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  40533585 aaaacttttgatatgattttaaccattggattgcatgtccattgtaattaatagtgaaccgtcg 40533522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 48527527 - 48527615
Alignment:
Q  37 tattaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccct 125  Q
    ||||||||||||||||| ||||||||| ||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||    
T  48527527 tattaggcttaattggatttttggtcccctaagtaatttgttgtttacattttggtcccataactcgtaaaattaacattttggtccct 48527615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 42 - 241
Target Start/End: Original strand, 5611724 - 5611932
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| | ||||||||||||||||||| ||||   |||| ||| |||    
T  5611724 ggcttaattggacttttggtcctttaactaatttgttgttttcattttggtcccataatttgtaaaatcaacattttggtgcctcaacttttactctgtt 5611823  T
Q  142 aatcaatttggcccc----------ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaata 231  Q
    | | ||||||| |||          ||||||||  |||| ||||||| ||||| ||||| | |||||||||||||||||| ||||||| ||||| | | |    
T  5611824 agtaaatttggtcccccaacttttactccgttaatttttcaatgtct-aaattcttgatttgattttaaccatttgattgtatgtccaatgtattttaca 5611922  T
Q  232 gtgaaccgtc 241  Q
    ||||||||||    
T  5611923 gtgaaccgtc 5611932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 7306370 - 7306268
Alignment:
Q  45 ttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaat 144  Q
    ||||||||||||||||| |  |||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||| |    
T  7306370 ttaattggacttttggttccttaagtaatttgttgttttcattttggtcctataactcgtaaaattaacattttggtccctcttgttttcctctgttagt 7306271  T
Q  145 caa 147  Q
    |||    
T  7306270 caa 7306268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 43 - 221
Target Start/End: Complemental strand, 51446960 - 51446782
Alignment:
Q  43 gcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtta 142  Q
    |||||||||||| ||||||||||||| |||||     ||| |||||||||| ||||| | |||||| | |||||||||||||  | |||||||||||| |    
T  51446960 gcttaattggacatttggtcctctaaataattatgcatttacattttggtcacataaattgtaaaacccacattttggtccccttggttttgctccgtca 51446861  T
Q  143 atcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccatt 221  Q
     |||| |||  |||||||||||| |||||||| |||||| |||||||| | ||||||||  ||||||||||||||||||    
T  51446860 gtcaaattgatcccctccgttagttttttaatatctaaattttttgatatgattttaactgtttgattgcatgtccatt 51446782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 26286410 - 26286515
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    |||||||||||||||||||||| |||| |||||| | ||||||||||||||||||||| ||||||||||||||| ||||||||||    |||||||||||    
T  26286410 ggcttaattggacttttggtcccctaactaatttgtcgttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacgtttgctccgtt 26286509  T
Q  142 aatcaa 147  Q
    | ||||    
T  26286510 agtcaa 26286515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 221
Target Start/End: Complemental strand, 14479634 - 14479454
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgt 140  Q
    |||||||||||||| |||||||| |||| |||||    |||| |||||||||||||||| | ||||||   |||||||||||||  | |||||||||| |    
T  14479634 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtccccttggttttgctccat 14479535  T
Q  141 taatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccatt 221  Q
     | |||| |||  |||||||||||| |||||||||  ||||||||||||| | || ||| || ||||||||||||||||||    
T  14479534 cagtcaaattgatcccctccgttagttttttaatgattaaaatttttgatattatattagccgtttgattgcatgtccatt 14479454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 5613205 - 5613098
Alignment:
Q  40 taggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccg 139  Q
    |||||||||||||||||||| ||| |||| |||||| | ||||||||||||||||||||| ||||||||||||||| ||||||||||    |||||||||    
T  5613205 taggcttaattggacttttgatcccctaactaatttgtcgttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacgtttgctccg 5613106  T
Q  140 ttaatcaa 147  Q
    ||| ||||    
T  5613105 ttagtcaa 5613098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 136
Target Start/End: Original strand, 7304810 - 7304904
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgct 136  Q
    |||||||||||||| ||||| | | || |||||| ||||||||||| || ||||||||||||||||||||| ||||||||||||||| |||||||    
T  7304810 ggcttaattggactcttggttcccgaaataatttgttgttttcattgtgatcccataactcgtaaaatcaatattttggtccctcttattttgct 7304904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 12665788 - 12665894
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgt 140  Q
    |||||||||| || ||||||||| ||||||||||    ||||| ||||||||||||||| ||||||||||||||||| |||||||||| ||||||| |||    
T  12665788 aggcttaatttgatttttggtcccctaagtaattatcagtttttattttggtcccataattcgtaaaatcaacatttcggtccctcttattttgcttcgt 12665887  T
Q  141 taatcaa 147  Q
    || ||||    
T  12665888 tagtcaa 12665894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 79 - 238
Target Start/End: Original strand, 6047954 - 6048111
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagctttttaatgtct 178  Q
    ||||| ||||||||||||||| || || ||| | ||||||||||| ||   ||||||||||| | ||||||||| | |  |||| || ||||||||| ||    
T  6047954 gttttaattttggtcccataagtcctataattatcattttggtcc-tcaacttttgctccgtcattcaatttggtctctaccgt-aggtttttaatgcct 6048051  T
Q  179 aaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    ||| |||||||| | ||| |||||||||||||| | ||||||||||||||||||||||||    
T  6048052 aaattttttgatttgattctaaccatttgattggaggtccattgtatctaatagtgaacc 6048111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 235
Target Start/End: Original strand, 52076566 - 52076722
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagctttttaatgtct 178  Q
    |||||| |||||||||||| | ||  ||||||| ||||||||||||||    |||||||||||| || |||||| || | |||||||  ||||||| | |    
T  52076566 gttttcgttttggtcccattagtccaaaaatcatcattttggtccctcaacgtttgctccgttattcgatttggtcctcaccgttagtcttttaattttt 52076665  T
Q  179 aaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtga 235  Q
    || |||  ||||   |||||||||||||||||||||||| ||||| |||||||||||    
T  52076666 aatattcatgatgcgattttaaccatttgattgcatgtctattgtttctaatagtga 52076722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 24516422 - 24516525
Alignment:
Q  135 ctccgttaatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtg 234  Q
    ||||||| || ||| ||| |||| | ||||| |||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||||| |||  |||    
T  24516422 ctccgtttattaatgtggtcccccctgttagttttttaatgtataaaattcttgatatgattttaaccatttgattgcatgtccattgtatttaacggtg 24516521  T
Q  235 aacc 238  Q
    ||||    
T  24516522 aacc 24516525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 26803211 - 26803141
Alignment:
Q  168 ttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    ||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||||| ||| ||||||||    
T  26803211 ttttaatgtataaaattcttgatatgattttaaccatttgattgcatgtccattgtatttaacagtgaacc 26803141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 40110654 - 40110577
Alignment:
Q  161 gttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    ||||| |||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||||| |||  |||||||    
T  40110654 gttagttttttaatgtataaaattattgatatgattttaaccatttgattgcatgtccattgtatttaacggtgaacc 40110577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 18818968 - 18819058
Alignment:
Q  36 atattaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctc 126  Q
    ||||| ||||||||||| |||||| |||| ||| ||||||   ||||||||| ||||||||||| |||||||||||| ||||| |||||||    
T  18818968 atatttggcttaattggtcttttgatcctttaattaattttcagttttcattatggtcccataaatcgtaaaatcaatattttagtccctc 18819058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 28050316 - 28050424
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttg-ttttgctc 137  Q
    |||||||||||| ||| ||||||||  ||| |||||   ||||| |||||||||||||||| | |||||||| ||||||||||||| |||| ||||||||    
T  28050316 ttaggcttaattagacatttggtcccttaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttggtccc-cttgattttgctc 28050414  T
Q  138 cgttaatcaa 147  Q
    ||||| ||||    
T  28050415 cgttagtcaa 28050424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 18821860 - 18821773
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctc 126  Q
    ||||||||| |||| ||||||||||||||| ||| ||   |||||||||||| || || |||||||||||||||| ||| ||||||||    
T  18821860 ttaggcttatttggtcttttggtcctctaattaactttcagttttcattttgatctcacaactcgtaaaatcaacgtttcggtccctc 18821773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 51217728 - 51217794
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgt 223  Q
    ||||||||| ||||||||| |||| ||||||||| |||||| ||||||| ||||||||||| |||||    
T  51217728 ctccgttagttttttaatgactaatatttttgatataatttcaaccattagattgcatgtctattgt 51217794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 242
Target Start/End: Complemental strand, 28051688 - 28051527
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttg-ttttgctccgttaatcaatttggccccctccgttagctttttaatgtc 177  Q
    |||| |||||||||||||||| | ||||||   ||||||||||||| |||| ||||||||||||| |||| |||   |  |||||||  ||||||||||     
T  28051688 gtttacattttggtcccataaattgtaaaactcacattttggtccc-cttgattttgctccgttagtcaaattgattca-tccgttaattttttaatgtt 28051591  T
Q  178 taaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcg 242  Q
    ||||||||||||| | || ||| |  |||||||||||||||||| || || ||||||| ||||||    
T  28051590 taaaatttttgatatgatattagctgtttgattgcatgtccattatacct-atagtgagccgtcg 28051527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 48492727 - 48492786
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataact 101  Q
    |||||||||  || ||||||||||||| | |||| |||||||||||||||||||||||||    
T  48492727 ggcttaattaaacctttggtcctctaacttatttgttgttttcattttggtcccataact 48492786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 51445587 - 51445669
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtcc 123  Q
    |||||||||||||| ||||||||||||| |||||    |||| |||||||||||||||| | ||||||   ||||||||||||    
T  51445587 aggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 51445669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 9482471 - 9482536
Alignment:
Q  58 tggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtcc 123  Q
    |||||| |||| |||||||  ||||| ||||| ||| |||| ||||||||||||||||||||||||    
T  9482471 tggtcccctaattaatttccagtttttattttagtcacatatctcgtaaaatcaacattttggtcc 9482536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 14478264 - 14478345
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtcc 123  Q
    ||||||||||||| ||||||||||||| |||||   ||||| ||||||| |||||||| | ||||||   ||||||||||||    
T  14478264 ggcttaattggacatttggtcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttggtcc 14478345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 19194891 - 19194824
Alignment:
Q  167 tttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtg 234  Q
    |||||||||| ||| || | |||| | |||||||||| ||||||||| || |||||||||||||||||    
T  19194891 tttttaatgtataatatgtatgatgtgattttaaccacttgattgcaggttcattgtatctaatagtg 19194824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 26055010 - 26055088
Alignment:
Q  160 cgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    |||||| ||||||||||| || |||| |||| |||||| ||||||| ||||||| ||| ||| |||  |||||||||||    
T  26055010 cgttagttttttaatgtcaaatatttatgatataatttcaaccattagattgcaggtctattatatacaatagtgaacc 26055088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 6049505 - 6049432
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttgg 152  Q
    ||||| ||||||||| ||||| || |||||||| ||||||||||||||    |||||| ||||| |||||||||    
T  6049505 gtttttattttggtctcataagtcctaaaatcatcattttggtccctcaacgtttgctacgttattcaatttgg 6049432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 14429743 - 14429808
Alignment:
Q  36 atattaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataact 101  Q
    |||||||| ||||||| || |||||||| | || | |||| ||||||||||||||||| |||||||    
T  14429743 atattaggtttaattgaacctttggtccccgaacttatttgttgttttcattttggtctcataact 14429808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 33941431 - 33941508
Alignment:
Q  161 gttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    ||||| |||||||||||||| |||||| || | ||||||||| |||||||||| || || ||||| |||  |||||||    
T  33941431 gttagttttttaatgtctaacatttttaatatgattttaaccgtttgattgcaggtgcactgtatataactgtgaacc 33941508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 9210125 - 9210073
Alignment:
Q  159 ccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattg 211  Q
    ||||||| |||||||||||| | ||| ||||| |||||| |||||||||||||    
T  9210125 ccgttagttttttaatgtcttatattcttgatataatttcaaccatttgattg 9210073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 15746887 - 15746827
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataa 99  Q
    ||||||||||| || | |||||||| |||| |||||||   ||||||||||||||||||||    
T  15746887 ttaggcttaataggtcatttggtcccctaattaatttccaattttcattttggtcccataa 15746827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 50679827 - 50679759
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    ||||||||| ||||||||||||||| |||||||| |  ||| |||| |||||||| | || ||||||||    
T  50679827 ctccgttagttttttaatgtctaaattttttgatatgttttcaaccgtttgattgtaggttcattgtat 50679759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 39 - 246
Target Start/End: Original strand, 6890 - 7096
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctcc 138  Q
    |||||||||||||||| ||||||||||||| |||||   ||||| |||||||||||||||| | |||||| |||||||||||| ||| | ||||||||||    
T  6890 ttaggcttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttggttcctttggttttgctcc 6989  T
Q  139 gttaatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    ||   |||| || |  ||||||||||| |||| ||| |||||| |||||||| ||||||||||| |||||||||||||||||| ||| ||||||||||||    
T  6990 gtcggtcaaatt-gatccctccgttagtttttcaatatctaaattttttgatataattttaaccgtttgattgcatgtccattatatttaatagtgaacc 7088  T
Q  239 gtcgacac 246  Q
    ||| ||||    
T  7089 gtcaacac 7096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 41 - 151
Target Start/End: Complemental strand, 8309 - 8199
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgt 140  Q
    ||||||||||| ||||||||||| ||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  8309 aggcttaattgaacttttggtcccctaagtaattctttgtttacattttggtcccataactcgtaaaatcaacattttggtccctctcgttttactccgt 8210  T
Q  141 taatcaatttg 151  Q
    || ||||||||    
T  8209 tagtcaatttg 8199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 238
Target Start/End: Complemental strand, 18242390 - 18242232
Alignment:
Q  80 ttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagctttttaatgtcta 179  Q
    |||| ||| ||||||||||| || |||||||| || |||||||||||   ||||||||| ||| ||||||| | |||||||||||| ||||||||||||     
T  18242390 tttttattctggtcccataagtcttaaaatcatcaatttggtccctcaacttttgctccattattcaatttcgtcccctccgttagttttttaatgtctt 18242291  T
Q  180 aaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    |||||||| || |||||||||||||||||||||||||||||||||| | ||||||||||    
T  18242290 aaatttttaatttaattttaaccatttgattgcatgtccattgtattttatagtgaacc 18242232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 234
Target Start/End: Complemental strand, 138324 - 138132
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    ||||||||| |||||||||||| |||| ||||||  ||||||||||||||||||||||||  |||||||||| ||| |||||||      |  | |||||    
T  138324 ggcttaatttgacttttggtcccctaactaatttgatgttttcattttggtcccataacttctaaaatcaacgtttcggtcccttacaaatgtcaccgtt 138225  T
Q  142 aatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtg 234  Q
      |||| |||  |||||||||||  ||||||||||||||| |||||||| |||||||||||||  ||||||||||||||||||  ||||||||    
T  138224 ggtcaaattgatcccctccgttatttttttaatgtctaaactttttgatgtaattttaaccatccgattgcatgtccattgtagttaatagtg 138132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 234
Target Start/End: Complemental strand, 146345 - 146153
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    ||||||||| |||||||||||| |||| ||||||  ||||||||||||||||||||||||  |||||||||| ||| |||||||      |  | |||||    
T  146345 ggcttaatttgacttttggtcccctaactaatttgatgttttcattttggtcccataacttctaaaatcaacgtttcggtcccttacaaatgtcaccgtt 146246  T
Q  142 aatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtg 234  Q
      |||| |||  |||||||||||  ||||||||||||||| |||||||| |||||||||||||  ||||||||||||||||||  ||||||||    
T  146245 ggtcaaattgatcccctccgttatttttttaatgtctaaactttttgatgtaattttaaccatccgattgcatgtccattgtagttaatagtg 146153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 11968594 - 11968486
Alignment:
Q  43 gcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtta 142  Q
    ||||||||||| ||||||||| |||| |||||| ||||||||||||||||| ||||||  ||||||| ||| ||||||||||| ||||||||||  ||||    
T  11968594 gcttaattggatttttggtcccctaactaatttgttgttttcattttggtctcataacctgtaaaattaacgttttggtcccttttgttttgctttgtta 11968495  T
Q  143 atcaatttg 151  Q
     ||||||||    
T  11968494 gtcaatttg 11968486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 30231475 - 30231559
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccct 125  Q
    |||||||||||||||||||||||  ||| |||||| |||||||||||||||||||||||||  |||||||||| |||||||||||    
T  30231475 aggcttaattggacttttggtcccttaactaatttgttgttttcattttggtcccataacttctaaaatcaacgttttggtccct 30231559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 30233027 - 30232941
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccct 125  Q
    ||||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||||||  |||||||||| ||| |||||||    
T  30233027 ttaggcttaattggacttttggtcccctaactagtttgttgttttcattttggtcccataacttctaaaatcaacgtttcggtccct 30232941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 136623 - 136708
Alignment:
Q  40 taggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccct 125  Q
    ||||||||||||||||||| |||| |||| |||||| ||||||| ||||| |||||||||||  |||||||||| |||||||||||    
T  136623 taggcttaattggacttttcgtcccctaactaatttgttgtttttattttagtcccataacttttaaaatcaacgttttggtccct 136708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 35037129 - 35037208
Alignment:
Q  40 taggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttg 119  Q
    |||||||||||||  |||||||||||||| ||||||   ||||||||||||||| |||||||| |||||||||| |||||    
T  35037129 taggcttaattggttttttggtcctctaattaattttcagttttcattttggtctcataactcataaaatcaacgttttg 35037208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 11967249 - 11967326
Alignment:
Q  45 ttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtc 122  Q
    ||||||| ||||||||||| |||| |||||| ||||||||||||||||  |||||||| |||||||||  ||||||||    
T  11967249 ttaattgtacttttggtcccctaattaatttgttgttttcattttggtttcataactcataaaatcaatgttttggtc 11967326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 30232899 - 30232826
Alignment:
Q  167 tttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    ||||||||||||||| ||||| || |||||||||||||  ||||||||||||||||||  | |||||||||||||    
T  30232899 tttttaatgtctaaacttttttatataattttaaccatccgattgcatgtccattgta-gttatagtgaaccgtc 30232826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 11968453 - 11968410
Alignment:
Q  174 tgtctaaaatttttgatctaattttaaccatttgattgcatgtc 217  Q
    ||||||||||||||||| | ||||||||||||||||||||||||    
T  11968453 tgtctaaaatttttgatttgattttaaccatttgattgcatgtc 11968410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 29675589 - 29675664
Alignment:
Q  159 ccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtg 234  Q
    ||||||| |||||||||| ||| || | |||| | |||||||||| | ||||||| ||||||||||||||||||||    
T  29675589 ccgttagttttttaatgtataatatgtatgatgtgattttaaccactggattgcaggtccattgtatctaatagtg 29675664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 11722777 - 11722882
Alignment:
Q  35 tatattaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctctt-gtttt 133  Q
    |||||| ||||||||||||| |||| |||||||| |||||   ||||| ||||||| |||||||| | ||||||   |||||||||| |||||| |||||    
T  11722777 tatatttggcttaattggacatttgatcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttggt-cctcttggtttt 11722875  T
Q  134 gctccgt 140  Q
    |||||||    
T  11722876 gctccgt 11722882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 18773755 - 18773832
Alignment:
Q  148 tttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    ||||| || ||| ||||| |||||||||||| |  |||||||| | |||||||||||| ||||||||||| |||||||    
T  18773755 tttggtcctctctgttagttttttaatgtctgatgtttttgatatgattttaaccattcgattgcatgtctattgtat 18773832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 27438929 - 27438991
Alignment:
Q  186 ttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcgacactt 248  Q
    ||||| |||||||||||| ||||||||| ||| || |||||||| |||||||| || ||||||    
T  27438929 ttgatataattttaaccacttgattgcaggtctatagtatctaagagtgaaccatcaacactt 27438991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 8695122 - 8695194
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatca 111  Q
    ||||||| |||||  ||||||||||  ||| |||||  |||||||| ||||||||||||||||  ||||||||    
T  8695122 ttaggctaaattgaccttttggtcccttaactaattctttgttttcgttttggtcccataacttctaaaatca 8695194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 37416556 - 37416451
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    ||||||||||| |||||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37416556 ggcttaattggccttttggtcccctaagtaatttgttgttttcattttggttccataactcataaaatcaacattttggtccctcttgttttgctccgtt 37416457  T
Q  142 aatcaa 147  Q
    | ||||    
T  37416456 agtcaa 37416451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 238
Target Start/End: Complemental strand, 10301898 - 10301740
Alignment:
Q  80 ttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagctttttaatgtcta 179  Q
    |||||||||||||||||||| || |||||||| || | |||||| ||   ||||||||||||| |||||||||   |||| ||||| |||||||||||||    
T  10301898 ttttcattttggtcccataagtcttaaaatcatcaatatggtccttcaacttttgctccgttagtcaatttggtgtcctctgttagttttttaatgtcta 10301799  T
Q  180 aaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    || |||||||| | |||||||||||||||||| ||||||||||||| ||| ||||||||    
T  10301798 aattttttgatttgattttaaccatttgattgaatgtccattgtatttaacagtgaacc 10301740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 7271624 - 7271513
Alignment:
Q  130 ttttgctccgttaatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaa 229  Q
    ||||||||||||| ||||||  | |||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | |    
T  7271624 ttttgctccgttattcaattccgtcccctccgttagttttttaatgtctaaactttttgatttaattttaaccatttgattgcatgtccattgtatttta 7271525  T
Q  230 tagtgaaccgtc 241  Q
    ||||||| ||||    
T  7271524 tagtgaatcgtc 7271513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 37414996 - 37415098
Alignment:
Q  45 ttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaat 144  Q
    |||||| ||||||||||||  |||||||||| || |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  37414996 ttaattagacttttggtcccttaagtaatttgttattttcattttggtctcataactcgtaaaatcaacattttggttcctcttgttttgctccgttagt 37415095  T
Q  145 caa 147  Q
    |||    
T  37415096 caa 37415098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 48253043 - 48253132
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcgacac 246  Q
    ||||||||| ||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  48253043 ctccgttagttttttaatgtctaaattttttgatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaactgtcaacac 48253132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 47766954 - 47766873
Alignment:
Q  160 cgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    |||||| ||||||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47766954 cgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 47766873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 53809499 - 53809415
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| ||| |||||| ||||    
T  53809499 ctccgttagttttttaatgtctaaattttttgatataattttaaccatttgattgcatgtctattgtatttaacagtgaatcgtc 53809415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 10339995 - 10339911
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    ||||||||| ||||||||||||||| |||||||| | |||| ||||||||||||| ||||||||||||| ||| |||||||||||    
T  10339995 ctccgttagttttttaatgtctaaattttttgatttgatttgaaccatttgattgaatgtccattgtatttaacagtgaaccgtc 10339911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 221
Target Start/End: Complemental strand, 49381073 - 49380893
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgt 140  Q
    |||||||||||||  |||||||| |||| |||||    |||| ||||||||||| |||| | ||||||   | |||||||| ||  | ||||||||||||    
T  49381073 aggcttaattggatatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcatattttggtacccttggttttgctccgt 49380974  T
Q  141 taatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccatt 221  Q
     | |||| |||  |||||||||||| |||||||||| ||||||||||||| | || ||| || ||||||||||||||||||    
T  49380973 cagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgatattagccgtttgattgcatgtccatt 49380893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 221
Target Start/End: Complemental strand, 13622076 - 13621897
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttg-ttttgctccgt 140  Q
    ||||||||||||| |||||||| |||| |||||    |||| ||||||||||| |||| | ||||||   ||||||||||||| |||| ||||||| |||    
T  13622076 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccc-cttgattttgcttcgt 13621978  T
Q  141 taatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccatt 221  Q
     | |||| |||  |||||| ||||| |||||||| | ||||||||||||| | || ||| || ||||||||||||||||||    
T  13621977 cagtcaaattgatcccctcagttagttttttaatatttaaaatttttgatatgatattagccgtttgattgcatgtccatt 13621897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 14745281 - 14745213
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaa 147  Q
    |||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||    
T  14745281 gtttacatcttggtcccataactcgtaaagtcaacgttttggtccctcttgttttgctcagttagtcaa 14745213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 14744098 - 14744240
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagctttttaatgtct 178  Q
    |||| |||||||||| ||||| | ||||||   ||||||||||  |  | |||||||||||||| |||| |||  |  ||||||||  ||||||||||||    
T  14744098 gtttacattttggtctcataaattgtaaaactcacattttggtttcattggttttgctccgttagtcaaattgatcatctccgttaattttttaatgtct 14744197  T
Q  179 aaaatttttgatctaattttaaccatttgattgcatgtccatt 221  Q
    ||| |||||||| | |||||||||  |||||||||||||||||    
T  14744198 aaattttttgatatgattttaaccgattgattgcatgtccatt 14744240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 26797421 - 26797497
Alignment:
Q  149 ttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    ||||||| ||||||||| ||| |||||  ||| ||||||||| |||||| ||||||||||||||| |||||||||||    
T  26797421 ttggccctctccgttagttttctaatgattaatatttttgatataatttcaaccatttgattgcaggtccattgtat 26797497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 34123241 - 34123348
Alignment:
Q  81 tttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagctttttaatgtctaa 180  Q
    ||||||||| ||| ||||||||  |||||||||| |||||||| ||   |||| |||||||| |||| |||| |||||||||||| |||| |||||||||    
T  34123241 tttcattttagtctcataactcaaaaaatcaacactttggtcc-tcaactttttctccgttattcaacttggtcccctccgttagtttttcaatgtctaa 34123339  T
Q  181 aatttttga 189  Q
    | |||||||    
T  34123340 attttttga 34123348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 54750448 - 54750365
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    ||||||||  ||||||||||||||| |||||||| | |||||||||||||||||| ||||||| ||||| | | |||||||||||    
T  54750448 ctccgttaattttttaatgtctaaa-tttttgatttgattttaaccatttgattgtatgtccaatgtattttacagtgaaccgtc 54750365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 17345411 - 17345488
Alignment:
Q  148 tttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    ||||| || ||||||||| |||||||||||||| |||||| || | |||| ||||||| ||||||||||| |||||||    
T  17345411 tttggtcctctccgttagttttttaatgtctaatatttttaatatgatttgaaccattcgattgcatgtctattgtat 17345488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 32980458 - 32980377
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    ||||||||| |||||||| ||||| ||||||||| | |||| ||||||| ||||||| ||||||| |||  |||||||||||    
T  32980458 ctccgttagttttttaatttctaacatttttgatatgatttcaaccattcgattgcaggtccattatatacaatagtgaacc 32980377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 7270349 - 7270405
Alignment:
Q  70 taatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctc 126  Q
    |||||||  ||||||||||| ||||||||| || |||||||||||||||||||||||    
T  7270349 taatttccagttttcatttttgtcccataagtcttaaaatcaacattttggtccctc 7270405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 20486122 - 20486199
Alignment:
Q  161 gttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    ||||| |||||||||||||||| |||| || | ||||||| |||||||||||| ||| | ||||| ||| ||||||||    
T  20486122 gttagttttttaatgtctaaaacttttaatatgattttaatcatttgattgcaggtcgactgtatataacagtgaacc 20486199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 25585839 - 25585758
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    ||||||||| |||||||||||||| |||| |||| | |||| ||||||| |||||||  |||||| |||  |||||||||||    
T  25585839 ctccgttagttttttaatgtctaacatttctgatatgatttgaaccattcgattgcagatccattatatacaatagtgaacc 25585758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 21515410 - 21515450
Alignment:
Q  194 attttaaccatttgattgcatgtccattgtatctaatagtg 234  Q
    |||||||||| ||||||||| ||||||||||||||||||||    
T  21515410 attttaaccacttgattgcaggtccattgtatctaatagtg 21515450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 45422166 - 45422102
Alignment:
Q  162 ttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatc 226  Q
    |||| |||||||||||||| ||| ||||| | || ||||||||||||||||| ||| ||||||||    
T  45422166 ttagttttttaatgtctaatattcttgatatgatattaaccatttgattgcaggtctattgtatc 45422102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 143171 - 143104
Alignment:
Q  167 tttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtg 234  Q
    |||||||||| ||| || | |||| | |||||||||| ||||||||| || |||||||||||||||||    
T  143171 tttttaatgtataatatgtatgatgtgattttaaccacttgattgcaggttcattgtatctaatagtg 143104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 10338773 - 10338820
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctc 126  Q
    ||||||||||||||||||||| |  |||||||| ||||||||||||||    
T  10338773 gttttcattttggtcccataaattttaaaatcatcattttggtccctc 10338820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 40896749 - 40896682
Alignment:
Q  159 ccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatc 226  Q
    ||||||| |||||||||| ||| |||| |||| | |||||||||| ||||||| | ||||||||||||    
T  40896749 ccgttagttttttaatgtataatatttatgatgtgattttaaccacttgattgtaggtccattgtatc 40896682  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 3817367 - 3817325
Alignment:
Q  56 tttggtcctctaagtaatttcttgttttcattttggtcccata 98  Q
    |||||||| |||| ||||||| |||||||||||||||||||||    
T  3817367 tttggtcccctaactaatttcatgttttcattttggtcccata 3817325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 7921649 - 7921595
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattg 211  Q
    ||||||||| |||||||||||||| ||||||||| | |||| ||||||| |||||    
T  7921649 ctccgttagttttttaatgtctaatatttttgatatgatttcaaccattcgattg 7921595  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 11220673 - 11220583
Alignment:
Q  148 tttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    ||||| |||||||||| | ||||||||||| || |||| |||| |||||| |||||||  |||||| ||||||| |||  | |||||||||    
T  11220673 tttggtcccctccgtttgttttttaatgtcaaatatttatgatataatttcaaccattatattgcaggtccattatatacagtagtgaacc 11220583  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 13620916 - 13621016
Alignment:
Q  40 taggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctctt-gttttgctcc 138  Q
    ||||||||||| ||| ||||||||||||| |||||    |||| |||||||||| ||||| | ||||||   |||||||||| |||||| ||||||||||    
T  13620916 taggcttaatttgacatttggtcctctaaataattatgcgtttacattttggtctcataaattgtaaaactcacattttggt-cctcttggttttgctcc 13621014  T
Q  139 gt 140  Q
    ||    
T  13621015 gt 13621016  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 40241827 - 40241759
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaa 108  Q
    ||||||||||||| | ||||  |||||| | | |||| |||||||||||||||||||||||||| |||||    
T  40241827 ttaggcttaattg-attttttatcctctgacttatttgttgttttcattttggtcccataactcttaaaa 40241759  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 99
Target Start/End: Original strand, 53612897 - 53612926
Alignment:
Q  70 taatttcttgttttcattttggtcccataa 99  Q
    ||||||||||||||||||||||||||||||    
T  53612897 taatttcttgttttcattttggtcccataa 53612926  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 5122433 - 5122493
Alignment:
Q  167 tttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatct 227  Q
    |||||||||||||| |||||| || | ||||||||  ||| ||| ||||||||||||||||    
T  5122433 tttttaatgtctaatattttttatatgattttaactgtttaattacatgtccattgtatct 5122493  T

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Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 99
Target Start/End: Original strand, 10730912 - 10730940
Alignment:
Q  71 aatttcttgttttcattttggtcccataa 99  Q
    |||||||||||||||||||||||||||||    
T  10730912 aatttcttgttttcattttggtcccataa 10730940  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 58 - 246
Target Start/End: Original strand, 19397544 - 19397732
Alignment:
Q  58 tggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccc 157  Q
    |||||| |||| ||||| |  |||| |||||||||||||||| |  |||||  ||||||||||||||||| |||||||||||||| |||    || |||     
T  19397544 tggtcccctaaataattaccagtttacattttggtcccataaattttaaaactaacattttggtccctctcgttttgctccgttagtcataaaggtccct 19397643  T
Q  158 tccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcgacac 246  Q
    |||||||  |||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||  ||||||||||| ||||||||    
T  19397644 tccgttatttttttaatgtctaaaacttttgatataattttaaccattggattgcatgtccattgtaattaatagtgaactgtcgacac 19397732  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 238
Target Start/End: Original strand, 1147747 - 1147943
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    |||||||||||||||||||||| |||| |||||| ||||||||||||| |||||||||||  |||||||||| ||| |||||||      |  | |||||    
T  1147747 ggcttaattggacttttggtcccctaactaatttgttgttttcattttagtcccataacttctaaaatcaacgtttcggtcccttacaaatatcaccgtt 1147846  T
Q  142 aatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    | |||| |||  |||||||||||  ||||||||||||||| |||||||| | |||||||||||  ||||||||||||||| ||  ||||||||||||    
T  1147847 agtcaaattgatcccctccgttatttttttaatgtctaaactttttgatatgattttaaccatccgattgcatgtccattctagttaatagtgaacc 1147943  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 238
Target Start/End: Original strand, 4919825 - 4920020
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    ||||||||||||| ||||||||||||| |||||     ||| || ||||||||||||| |  ||||||| |||||||||||||  | ||||||||||||     
T  4919825 ggcttaattggacatttggtcctctaaataattatgcatttacaatttggtcccataaattataaaatccacattttggtccccttggttttgctccgtc 4919924  T
Q  142 aatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    | |||| |||  ||||||| |||| |||||||  |||||| |||||||| | ||||||||| |||||||||||||||||| || || ||||||||||    
T  4919925 agtcaaattgatcccctccattagttttttaacatctaaattttttgatatgattttaaccgtttgattgcatgtccattatacct-atagtgaacc 4920020  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 1309396 - 1309487
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgtttt 133  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||||||| |||  |||||||||||||| |||||||||||||||||||||||    
T  1309396 ggcttaattggatttttggtcccctaagtaatttgttgttttcattttagtcatataactcgtaaaattaacattttggtccctcttgtttt 1309487  T

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Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 242
Target Start/End: Original strand, 28610018 - 28610219
Alignment:
Q  40 taggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccg 139  Q
    ||||||||||||||| |||||||  |||| |||||    |||| |||||||||||||||| | |||||||  |||||||||||||  | |||||||||||    
T  28610018 taggcttaattggacatttggtcacctaaataattatgagtttacattttggtcccataaattgtaaaattcacattttggtccccttggttttgctccg 28610117  T
Q  140 ttaatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccg 239  Q
    | | |||| |||  ||| |||||||| |||||||||| ||||||||||||| | || ||| || ||||||||||||| |||| || || ||||||| |||    
T  28610118 tcagtcaaattgatcccatccgttagttttttaatgtttaaaatttttgatatgatattagccgtttgattgcatgttcattatacct-atagtgagccg 28610216  T
Q  240 tcg 242  Q
    |||    
T  28610217 tcg 28610219  T

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Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 1149307 - 1149223
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccct 125  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||  |||||||||| |||||||||||    
T  1149307 aggcttaattggacttttggtcccctaactaatttgttgttttcattttggtcccataacttctaaaatcaacgttttggtccct 1149223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 1310786 - 1310681
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    ||||||||||||||   ||||| | ||||||||| |||||||||||||  || ||||||||||||||||||||||||||||||||| |||||| | ||||    
T  1310786 ggcttaattggactcaaggtccccgaagtaatttgttgttttcattttaatctcataactcgtaaaatcaacattttggtccctctcgttttgtttcgtt 1310687  T
Q  142 aatcaa 147  Q
    | ||||    
T  1310686 agtcaa 1310681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 241
Target Start/End: Original strand, 45699569 - 45699725
Alignment:
Q  84 cattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagctttttaatgtctaaaat 183  Q
    ||||||||| |||||| | ||||||   ||||||| |||||| | |||||||||||| | |||| ||| |||||||| |||| |||||||| |||||| |    
T  45699569 cattttggttccataaattgtaaaactcacattttagtccctttggttttgctccgtcagtcaaattgaccccctccattagttttttaatatctaaatt 45699668  T
Q  184 ttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    ||||||| | ||||||||  |||||||||||||||||  || || |||||||||||||    
T  45699669 ttttgatatgattttaactgtttgattgcatgtccatcatacct-atagtgaaccgtc 45699725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 142
Target Start/End: Complemental strand, 19398926 - 19398818
Alignment:
Q  34 atatattaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgtttt 133  Q
    |||| |||| ||||||||| |||||||| | |||| ||||| |  |||| |||||||||||||||| | |||||| | ||||||||||||||||||||||    
T  19398926 atattttagacttaattggtcttttggttccctaaataattaccggtttacattttggtcccataaattgtaaaacctacattttggtccctcttgtttt 19398827  T
Q  134 gctccgtta 142  Q
    |||||||||    
T  19398826 gctccgtta 19398818  T

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Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 8320776 - 8320833
Alignment:
Q  38 attaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtccc 95  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  8320776 attaggcttaattggacttttggtcccctaagtaatttcttgtttacattttggtccc 8320833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 40559228 - 40559144
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccct 125  Q
    |||||||||| ||  ||||||||||||| |||||| ||||||||||||||||||||||| |  ||||||||| | ||||||||||    
T  40559228 aggcttaattcgatatttggtcctctaactaatttgttgttttcattttggtcccataagttctaaaatcaataatttggtccct 40559144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 225
Target Start/End: Original strand, 16289812 - 16289958
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggccccctccgttagctttttaatgtct 178  Q
    ||||||||||||||| ||||||||| ||||| || | |||  || |||   ||||||| |  |  ||||||||| ||||||| |||| ||||||||||||    
T  16289812 gttttcattttggtctcataactcgaaaaattaatactttaatctctcaacttttgctacagttttcaatttggacccctccattagttttttaatgtct 16289911  T
Q  179 aaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    ||||||||| || | ||||||  |||||||| |||||||| ||||||    
T  16289912 aaaattttttatttgattttactcatttgatcgcatgtccgttgtat 16289958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 102475 - 102414
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactc 102  Q
    |||||||||||  | |||||||| |||| |||||||||||||||||||||||||||||||||    
T  102475 aggcttaattgatcatttggtcccctaactaatttcttgttttcattttggtcccataactc 102414  T

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Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 2717783 - 2717703
Alignment:
Q  159 ccgttagcttttt-aatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    ||||||||||||| ||||| ||| |||| |||||| |||||||||||||||||||| ||||||| |||| ||| |||||||    
T  2717783 ccgttagcttttttaatgtttaatatttctgatctgattttaaccatttgattgcacgtccattatatcaaatggtgaacc 2717703  T

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Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 23233776 - 23233709
Alignment:
Q  80 ttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaa 147  Q
    |||||||||||||||||||| || |||||||| ||||||||||||||   ||||||||||||| ||||    
T  23233776 ttttcattttggtcccataagtcttaaaatcatcattttggtccctcaacttttgctccgttattcaa 23233709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 40556938 - 40557021
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccct 125  Q
    ||||||||| ||  ||||||||||||| |||||| ||||||||||||||||| ||||| |  ||||||||||  ||||||||||    
T  40556938 ggcttaatttgatatttggtcctctaattaatttgttgttttcattttggtctcataagttctaaaatcaacgatttggtccct 40557021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 25559280 - 25559378
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgt 140  Q
    ||||||||| ||  |||||||| |||| |||||| ||||||| ||||||||||||||| |  ||||||||||  |||||||||| |  |||||||||||    
T  25559280 ggcttaattcgatatttggtcccctaactaatttgttgtttttattttggtcccataagttctaaaatcaacgatttggtccctttgcttttgctccgt 25559378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 6707027 - 6707100
Alignment:
Q  148 tttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccatt 221  Q
    ||||| |||||||||||| ||||||||||| || |||| |||| |||||| ||||||| ||||||| |||||||    
T  6707027 tttggtcccctccgttagttttttaatgtcaaatatttatgatataatttcaaccattagattgcaggtccatt 6707100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 9474058 - 9473989
Alignment:
Q  154 cccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgt 223  Q
    ||||||| |||  |||||||||| ||| ||||||||| |||||||||| ||| |||||||||||||||||    
T  9474058 cccctccattaaatttttaatgtttaatatttttgatataattttaactattcgattgcatgtccattgt 9473989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 28611372 - 28611272
Alignment:
Q  40 taggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccg 139  Q
    ||||||||||||||  ||||||||||||| |||||    |||| |||||||||||||||| | |||||||  | |||||||||| | | |||||||||||    
T  28611372 taggcttaattggatatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaattcatattttggtccttttggttttgctccg 28611273  T
Q  140 t 140  Q
    |    
T  28611272 t 28611272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 25561780 - 25561681
Alignment:
Q  39 ttaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctcc 138  Q
    |||||| ||||| ||  |||||||  |||| |||||| ||||||||||||||||||||||| |  ||||||||||  |||||||||| |  |||||||||    
T  25561780 ttaggcgtaattcgatatttggtcgcctaactaatttgttgttttcattttggtcccataaattctaaaatcaacgatttggtccctttgcttttgctcc 25561681  T

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Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 26206062 - 26205985
Alignment:
Q  148 tttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    ||||| || ||||||||| ||||||||| |||| |||||  || |||||| ||||||| ||||||||||| |||||||    
T  26206062 tttggtcctctccgttagttttttaatgactaatattttatatataatttcaaccattcgattgcatgtctattgtat 26205985  T

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Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 35903500 - 35903565
Alignment:
Q  36 atattaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataact 101  Q
    ||||| |||||||| || | ||||||||| ||| |||||||  |||||||||||||||||||||||    
T  35903500 atatttggcttaataggtcatttggtcctttaattaatttcaagttttcattttggtcccataact 35903565  T

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Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 101991 - 102055
Alignment:
Q  38 attaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactc 102  Q
    ||||||||||||||  | |||| ||  |||| ||||||||||||||||||||||| |||||||||    
T  101991 attaggcttaattgatcatttgatcacctaactaatttcttgttttcattttggttccataactc 102055  T

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Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 4830681 - 4830613
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    ||||||||| |||| ||||||||| ||||||||| | |||| ||||||| ||||| | |||||||||||    
T  4830681 ctccgttagtttttgaatgtctaatatttttgatatgatttcaaccattcgattgtaggtccattgtat 4830613  T

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Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 8321358 - 8321263
Alignment:
Q  45 ttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgt 140  Q
    |||||||||| |||| |||||||| |||||    |||| |||||||||||||||| |  ||||| ||||||||| |||||| |  |||||||||||    
T  8321358 ttaattggacatttgatcctctaaataattatgcgtttacattttggtcccataaattttaaaaccaacattttagtccctttaattttgctccgt 8321263  T

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Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 23231575 - 23231622
Alignment:
Q  79 gttttcattttggtcccataactcgtaaaatcaacattttggtccctc 126  Q
    ||||| ||||||||||||||| || |||||||| ||||||||||||||    
T  23231575 gtttttattttggtcccataagtcttaaaatcatcattttggtccctc 23231622  T

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Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 4513759 - 4513693
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgt 223  Q
    ||||||||| |||||| |   ||| ||||||||| |||||| ||||||||||||||||||| |||||    
T  4513759 ctccgttagttttttattaaataatatttttgatataatttcaaccatttgattgcatgtctattgt 4513693  T

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Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 4921177 - 4921095
Alignment:
Q  41 aggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtcc 123  Q
    |||||||||||||| ||||||||||||| |||||    |||| |||||| ||||||||| | ||||||   ||||||||||||    
T  4921177 aggcttaattggacatttggtcctctaaataattatgcgtttacattttagtcccataaattgtaaaactcacattttggtcc 4921095  T

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Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 25569883 - 25569960
Alignment:
Q  161 gttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    ||||| |||||||||| ||  ||| ||||| | |||||||||| ||||||||||||| || |||| ||| ||||||||    
T  25569883 gttagttttttaatgtatattattcttgatatcattttaaccacttgattgcatgtctatagtatttaagagtgaacc 25569960  T

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Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 42596673 - 42596750
Alignment:
Q  160 cgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaac 237  Q
    |||||| |||||||||||||| | | ||||| ||| || ||||||  |||||||  |||||||||| |||||||||||    
T  42596673 cgttagttttttaatgtctaataatgttgatataacttcaaccatccgattgcagatccattgtatataatagtgaac 42596750  T

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Target: scaffold0114 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 38538 - 38737
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgtt 141  Q
    ||||||||||||| |||||||| |||| |||||    |||| |||||||||||||||| | ||||||   |||||||||||||  | ||||| ||||||     
T  38538 ggcttaattggacatttggtcccctaaataattatgagtttccattttggtcccataaattgtaaaactcacattttggtccccttggttttcctccgtc 38637  T
Q  142 aatcaatttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtc 241  Q
    | |||| |||  |||||||||||| |||||||||  |||||||||| || | || ||| || |||||||||||||||||| || || ||||||| |||||    
T  38638 agtcaaattgatcccctccgttagttttttaatgattaaaattttttatatgatattagccgtttgattgcatgtccattatacct-atagtgagccgtc 38736  T

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Target: scaffold0092 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 39825 - 39919
Alignment:
Q  45 ttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccg 139  Q
    ||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||||||||||| ||   ||| ||| ||||||||||||    
T  39825 ttaattggacttttggtcccctaagtaatttattattttcattttggtcccataacttgtaaaatcaacgttccagtctctcctgttttgctccg 39919  T

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Target: scaffold0084 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 11807 - 11884
Alignment:
Q  148 tttggccccctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    ||||| || ||||||||| |||||||||||||| ||||||||| | |||||||||||| ||||||||||  |||||||    
T  11807 tttggtcctctccgttagttttttaatgtctaatatttttgatgtgattttaaccattcgattgcatgtttattgtat 11884  T

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Target: scaffold0687 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 6570 - 6496
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttg-atctaattttaaccatttgattgcatgtccattgtatctaat 230  Q
    ||||||||| ||||||||||||||| |||||  || | |||||||||||||||||  ||||||||||||||||||    
T  6570 ctccgttagttttttaatgtctaaattttttttatgtgattttaaccatttgattctatgtccattgtatctaat 6496  T

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Target: scaffold0141 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 9860 - 9926
Alignment:
Q  45 ttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataactcgtaaaatca 111  Q
    ||||||||||||||| ||| |||  ||||||| |||||||||||||||| |||| ||||||||||||    
T  9860 ttaattggacttttgatcccctatttaatttcgtgttttcattttggtctcatagctcgtaaaatca 9926  T

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Target: scaffold0046 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 24821 - 24753
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtat 225  Q
    ||||||||| |||||||||||||| |||||| || | ||||||||||||  |||||||||| |||||||    
T  24821 ctccgttagttttttaatgtctaatattttttatgtgattttaaccattcaattgcatgtctattgtat 24753  T

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Target: scaffold2071 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 799 - 740
Alignment:
Q  42 ggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataact 101  Q
    |||||||| || | ||||||||||||| |||||||  |||||||||||||||||||||||    
T  799 ggcttaataggtcatttggtcctctaattaatttccagttttcattttggtcccataact 740  T

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Target: scaffold0148 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 15954 - 15908
Alignment:
Q  56 tttggtcctctaagtaatttcttgttttcattttggtcccataactc 102  Q
    ||||||||||||| | |||| ||||||||||||||||||||||||||    
T  15954 tttggtcctctaacttatttgttgttttcattttggtcccataactc 15908  T

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Target: scaffold0290 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 8489 - 8570
Alignment:
Q  157 ctccgttagctttttaatgtctaaaatttttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaacc 238  Q
    ||||||||| |||||||||| ||| |||| |||| |||||| ||||||| ||||||| |||| || |||  |||||||||||    
T  8489 ctccgttagttttttaatgtgtaacatttctgatataatttcaaccattcgattgcaggtccgttatatacaatagtgaacc 8570  T

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Target: scaffold0121 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 4450 - 4517
Alignment:
Q  80 ttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaa 147  Q
    |||| |||||| || ||||||||| ||||||||||||||| ||||||   ||||||||||||| ||||    
T  4450 tttttattttgctctcataactcgaaaaatcaacattttgctccctcaacttttgctccgttattcaa 4517  T

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Target: scaffold0011 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 127427 - 127490
Alignment:
Q  38 attaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataact 101  Q
    |||||||||||| || | |||||||| |||| |||||||  |||||| ||||||||||||||||    
T  127427 attaggcttaataggtcatttggtcccctaattaatttcaagttttcgttttggtcccataact 127490  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 48433 - 48371
Alignment:
Q  186 ttgatctaattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcgacactt 248  Q
    ||||| |||||||||||| ||||||||| ||| || |||||||| |||||||| || ||||||    
T  48433 ttgatataattttaaccacttgattgcaggtctatagtatctaagagtgaaccatcaacactt 48371  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 61845 - 61906
Alignment:
Q  38 attaggcttaattggacttttggtcctctaagtaatttcttgttttcattttggtcccataa 99  Q
    |||||||||| | | || |||||||| |||| ||||||| |||||||||||||||| |||||    
T  61845 attaggcttattagaacgtttggtcccctaaataatttcatgttttcattttggtctcataa 61906  T

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Target: scaffold0019; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 63235 - 63195
Alignment:
Q  56 tttggtcctctaagtaatttcttgttttcattttggtccca 96  Q
    |||||||||| || ||||||| |||||||||||||||||||    
T  63235 tttggtcctccaaataatttcgtgttttcattttggtccca 63195  T

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