View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20032_low_5 (Length: 249)
Name: NF20032_low_5
Description: NF20032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20032_low_5 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 10736748 - 10736516
Alignment:
| Q |
4 |
caacaaataaccccaattgagtttctctccttcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacatcccaaatcaataca |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10736748 |
caacaaataaccccaattgagtttctctccttcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacatcccaaatcaataca |
10736649 |
T |
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| Q |
104 |
tttttctcacaaatatccaaatagccagcaacatccccaaatcaacaaatacccataatcaattaaacagtaacaaaaaataaacagacaaacacgatca |
203 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
10736648 |
tttttctcacaaatatccaaatagtcagcaacatccccaaatcaacaaatacccataatcaattaaacaccaacaaaaaataaacaaacaaacacgatca |
10736549 |
T |
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| Q |
204 |
acaacagaagagaaattagcagcttttagattc |
236 |
Q |
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| T |
10736548 |
acaacagaagagaaattagcagcttttagattc |
10736516 |
T |
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Target: scaffold0219 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 7236 - 7351
Alignment:
| Q |
35 |
tcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacat-cccaaatcaatacatttttctcacaaatatccaaatagccagca |
133 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||| ||| || ||||||||||||| |||| ||||||||| ||||||||||| || |
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| T |
7236 |
tcccttcctgcatcatcattctcttttctcccttccttcaataacacaacaatatccccaaatcaatacccttttttcacaaatacccaaatagcca-ca |
7334 |
T |
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| Q |
134 |
acatccccaaatcaaca |
150 |
Q |
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| T |
7335 |
acacccccaaatcaaca |
7351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 40110427 - 40110370
Alignment:
| Q |
35 |
tcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacatccc |
92 |
Q |
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| T |
40110427 |
tcccttcctgcatcatcattctcttttctcccttcctgcaacaacacagcaacatccc |
40110370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 26802998 - 26802914
Alignment:
| Q |
35 |
tcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacat-cccaaatcaatacatttttctcacaaata |
118 |
Q |
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| T |
26802998 |
tccctttctgcatcatcattctcttttctcccttcctgcaacaacacagcaacatccccatatcaatactcttttttcacaaata |
26802914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 24516667 - 24516724
Alignment:
| Q |
35 |
tcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacatccc |
92 |
Q |
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| T |
24516667 |
tcccttcctgcatcatcgttctcttttctcccttcctgcaacaacacaacaacatccc |
24516724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 22620916 - 22620859
Alignment:
| Q |
35 |
tcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacatccc |
92 |
Q |
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| T |
22620916 |
tcccttcctgcataatcattctcttttctcccttcctgcaacaacacagcaacatccc |
22620859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 41348584 - 41348637
Alignment:
| Q |
39 |
ttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacatccc |
92 |
Q |
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| T |
41348584 |
ttcctgcatcatcattctcttttctcccttcctgcaacaacacaacaacatccc |
41348637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 148
Target Start/End: Complemental strand, 11968256 - 11968160
Alignment:
| Q |
53 |
ttctcttttctcccttcctgcaacaacacaccaacatcc-caaatcaatacatttttctcacaaatatccaaatagccagcaacatccccaaatcaa |
148 |
Q |
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|||||| |||||||||||| |||||||||| |||||||| ||||||||||| |||| ||||||||| |||||| ||||||| | |||||||||| |
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| T |
11968256 |
ttctctcttctcccttcctacaacaacacaacaacatcctcaaatcaatacccttttttcacaaatactcaaataaccagcaaaaatcccaaatcaa |
11968160 |
T |
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