View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20032_low_7 (Length: 207)

Name: NF20032_low_7
Description: NF20032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20032_low_7
NF20032_low_7
[»] chr3 (1 HSPs)
chr3 (16-191)||(12138010-12138185)
[»] chr8 (3 HSPs)
chr8 (121-191)||(5670850-5670920)
chr8 (121-191)||(5692596-5692666)
chr8 (121-191)||(5722940-5723010)
[»] chr7 (1 HSPs)
chr7 (120-191)||(13051978-13052049)
[»] scaffold0013 (1 HSPs)
scaffold0013 (121-183)||(93227-93289)
[»] chr4 (2 HSPs)
chr4 (121-189)||(162260-162328)
chr4 (121-168)||(103101-103148)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 12138010 - 12138185
Alignment:
Q  16 atacaccaagtatctataggtggaggatacatattcaaattaataacatacattaaatgtttgtctgttagcttcaaaattgttattttgtgtagagaag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12138010 atacaccaagtatctataggtggaggatacatattcaaattaataacatacattaaatgtttgtctgttagcttcaaaattgttattttgtgtagagaag 12138109  T
Q  116 aatgataccgaaagccaagtttttccccatgaaggtatctgtgtcacaccaccatgatcatgaatccactttcttg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12138110 aatgataccgaaagccaagtttttccccatgaaggtatctgtgtcacaccaccatgatcatgaatccactttcttg 12138185  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 5670850 - 5670920
Alignment:
Q  121 taccgaaagccaagtttttccccatgaaggtatctgtgtcacaccaccatgatcatgaatccactttcttg 191  Q
    ||||||||||||| ||||||||||||||||||  | ||||||||||||||||||||||||||| |||||||    
T  5670850 taccgaaagccaaatttttccccatgaaggtacgtatgtcacaccaccatgatcatgaatccattttcttg 5670920  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 5692596 - 5692666
Alignment:
Q  121 taccgaaagccaagtttttccccatgaaggtatctgtgtcacaccaccatgatcatgaatccactttcttg 191  Q
    |||||||||||||  |||||||||||||||||  | ||||||||||||||||||||||||||| |||||||    
T  5692596 taccgaaagccaaaattttccccatgaaggtacgtatgtcacaccaccatgatcatgaatccattttcttg 5692666  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 5722940 - 5723010
Alignment:
Q  121 taccgaaagccaagtttttccccatgaaggtatctgtgtcacaccaccatgatcatgaatccactttcttg 191  Q
    ||||||||||||  |||||||||||||||  |  | ||||||||||||||||||||||||||| |||||||    
T  5722940 taccgaaagccagatttttccccatgaagacacgtatgtcacaccaccatgatcatgaatccattttcttg 5723010  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 13052049 - 13051978
Alignment:
Q  120 ataccgaaagccaagtttttccccatgaaggtatctgtgtcacaccaccatgatcatgaatccactttcttg 191  Q
    |||||||||||||||||||||||||||||||||| || || |||||||| |||||| ||||||| |||||||    
T  13052049 ataccgaaagccaagtttttccccatgaaggtatatgcgttacaccaccgtgatcacgaatccagtttcttg 13051978  T

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Target: scaffold0013 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 93227 - 93289
Alignment:
Q  121 taccgaaagccaagtttttccccatgaaggtatctgtgtcacaccaccatgatcatgaatcca 183  Q
    |||||||||||| |||||||||||||||||||| ||||| |||||||||||| || |||||||    
T  93227 taccgaaagccatgtttttccccatgaaggtatatgtgttacaccaccatgaacacgaatcca 93289  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 162328 - 162260
Alignment:
Q  121 taccgaaagccaagtttttccccatgaaggtatctgtgtcacaccaccatgatcatgaatccactttct 189  Q
    |||||||||||||||||| ||||||||||||||  |||| |||||||| |||||| ||||||| |||||    
T  162328 taccgaaagccaagttttcccccatgaaggtatacgtgttacaccaccgtgatcacgaatccagtttct 162260  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 103148 - 103101
Alignment:
Q  121 taccgaaagccaagtttttccccatgaaggtatctgtgtcacaccacc 168  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  103148 taccgaaagccaagtttttccccatgaaggtatatatgtgacaccacc 103101  T

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