View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20033_high_9 (Length: 249)
Name: NF20033_high_9
Description: NF20033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20033_high_9 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 28453984 - 28453748
Alignment:
| Q |
14 |
gaacatgtgaaaactgttaaggcaaatgtttccgtactcctttggattcaagcttacaactttacattgtgcaaaataaaaataagctcacgcttaatca |
113 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28453984 |
gaacatgtgaaaactgttaagtcaaacgtttccgtactcctatggattcaagcttacaactttacattgtgcaaaataaaaataagctcacgcttaatca |
28453885 |
T |
|
| Q |
114 |
tttcaaggttctttagcacttaactgtcaacataaatcaaatatacatattgcataacaaatgtagctgtaa-tccaacatcttcaaaccaacatatgca |
212 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28453884 |
tttcaaggctctttagcacttaactgtgaacataaatcaaatatacatattggataacaaatgtagctgtaattccaacatcttcaaaccaacatatgca |
28453785 |
T |
|
| Q |
213 |
agacacaaacagtatatcaaacaaccaactacgtata |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28453784 |
agacacaaacagtatatcaaacaaccaactacgtata |
28453748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University