View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20033_low_1 (Length: 614)
Name: NF20033_low_1
Description: NF20033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20033_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 5 - 598
Target Start/End: Original strand, 41724556 - 41725149
Alignment:
| Q |
5 |
gaggagcagagatgagaagttagaggcatttaggtggcaattgttgagaacagaattagaaacaaagcagcttcagtcacacttggagggcttggtcaag |
104 |
Q |
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| T |
41724556 |
gaggatcaaagatgagaagttagaggcatttaggtggcaattgttgagaacagaattagaaacaaagcagcttcagtcacacttggagggcttggtgaag |
41724655 |
T |
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| Q |
105 |
gatgtgacacagctgagacatgacaagatgaaattggaaagcttattgttggagagagaggatgaaattaattctctgaaagaccaatttgcttcaaaat |
204 |
Q |
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| T |
41724656 |
gatgtgacacagctgagacatgacaagatgaaattggaaagcttattgttggagagagaggatgcaattaattctctgaaagaccaatttgcttcaaaat |
41724755 |
T |
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| Q |
205 |
tgaggccttcaaactgctttagaaacaactctaatttgtccccacaatcttcagaaatcactcaagatcctgtatggtctagagtcaagattgtgaagag |
304 |
Q |
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| T |
41724756 |
tgaggccttcaaactgctttagaaacaactctaatttgtccccacaatcttcagaaatcactcaagatcctgtatggtctagagtcaagattgtgaagag |
41724855 |
T |
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| Q |
305 |
aaaaccaggtgaaaaacagttagaaatgatggaaactttgactgaagaagtttgtgaaaaggaggtgcagcccttgaatcatgatcaatttgacgatgcg |
404 |
Q |
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| T |
41724856 |
aaaaccaggtgaaaaacagttagaaatgatggaaactttgactgaagaagtttgtgaaaaggaggtgcagcccttgaatcatgatcaatttgacgatgcg |
41724955 |
T |
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| Q |
405 |
aattcacaagttcaatctccagaaaataagattgaagaagaaaagcatgtttgtcgggaggacaatcccactcctgtgcagtatcaaagtccaaatcaca |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41724956 |
aattcacaagttcaatctccagaaaataagattgaagaagaaaagcatgtttgtcgggaggacaatcccactcctgtgcagtatcaaagtccaaatcaca |
41725055 |
T |
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| Q |
505 |
tagaaattgatactgctgaaaagataggttccactagcaagccctttaatgatgcaaaacaattccaatggaagatggatcttcatgctcttgg |
598 |
Q |
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| T |
41725056 |
tagaaattgatactgctgaaaagataggttccactagcaagccctttaatgatgcaaaacaattccaatggaagatggatcttcatgctcttgg |
41725149 |
T |
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