View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20033_low_10 (Length: 267)
Name: NF20033_low_10
Description: NF20033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20033_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 42855192 - 42854940
Alignment:
| Q |
1 |
attaaggaagacttaaatccctcccaatagtgnnnnnnnntgaaaatgagatccagaaaaaaccatagtgagagaagcttttaacatgccctcctccaag |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42855192 |
attaaagaagacttaaatccctcccaatagtgaaaaaaaatgaaaatgagatccagaaaaaaccatagtgagagaagcttttaacatgccctcctccaag |
42855093 |
T |
|
| Q |
101 |
cgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctgatgccgttgcattaagatcacaaagctggaagttaaaatgtaaaata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42855092 |
tgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctgatgccgttgcattaagatcacaaagctggaagttaaaatgtaaaata |
42854993 |
T |
|
| Q |
201 |
tctattattgcggatcgacaagaatgagaaagaataccat-atatatcttatg |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42854992 |
tctattattgcggatcgacaagaatgagaaagaataccatgatatatcttatg |
42854940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 42848648 - 42848412
Alignment:
| Q |
1 |
attaaggaagacttaaatccctcccaatagtgnnnnnnnn-tgaaaatgagatccagaaaaaaccatagtgagagaagcttttaacatgccctcctccaa |
99 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42848648 |
attaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacatgccctcctccaa |
42848549 |
T |
|
| Q |
100 |
gcgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctgatgccgttgcattaagatcacaaagctggaagttaaaatgtaaaat |
199 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
42848548 |
gcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgcagttgcattaagatcacaaagctggaaggtaaaatgtaaagt |
42848449 |
T |
|
| Q |
200 |
atctattattgcggatcgacaagaatgagaaagaata |
236 |
Q |
| |
|
|| ||||||||| |||||||||||||| |||||||| |
|
|
| T |
42848448 |
atttattattgctaatcgacaagaatgaaaaagaata |
42848412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 44 - 210
Target Start/End: Complemental strand, 42860864 - 42860697
Alignment:
| Q |
44 |
aaatgagatccagaaaaaaccatagtgagagaagcttttaacatgccctcctccaagcgttttgaaagattcttaatcctccttttctgcatttcattaa |
143 |
Q |
| |
|
||||||||||||||||||||| | ||||||| |||||| |||| |||||| |||| |||||||||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
42860864 |
aaatgagatccagaaaaaaccttcgtgagagcagctttgaacaggccctcgtccaggcgttttgaaagatctgtaatcctccctttctgcatttcagtaa |
42860765 |
T |
|
| Q |
144 |
ttggctgctgatgccgttgcattaagatcacaaagctgg-aagttaaaatgtaaaatatctattattg |
210 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
42860764 |
ttggctgttgatgccgttgcattaagatcacaaagctggaaaggtaaaatgtaaaatatctattattg |
42860697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 44 - 210
Target Start/End: Complemental strand, 42856787 - 42856620
Alignment:
| Q |
44 |
aaatgagatccagaaaaaaccatagtgagagaagcttttaacatgccctcctccaagcgttttgaaagattcttaatcctccttttctgcatttcattaa |
143 |
Q |
| |
|
||||||||||||||||||||| | ||||||| |||||| |||| |||||| |||| |||||||||||||| ||||| ||| ||||||||||||| ||| |
|
|
| T |
42856787 |
aaatgagatccagaaaaaaccttcgtgagagcagctttgaacaggccctcatccaggcgttttgaaagatctgtaatcttccctttctgcatttcagtaa |
42856688 |
T |
|
| Q |
144 |
ttggctgctgatgccgttgcattaagatcacaaagctgg-aagttaaaatgtaaaatatctattattg |
210 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
42856687 |
ttggctgttgatgccgttgcattaagatcacaaagctggaaaggtaaaatgtaaaatatctattattg |
42856620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 42853302 - 42853108
Alignment:
| Q |
1 |
attaaggaagacttaaatccctcccaatagtgnnnnnnnn-tgaaaatgagatccagaaaaaaccatagtgagagaagcttttaacatgccctcctccaa |
99 |
Q |
| |
|
||||||||||| |||||||||||||||||||| | || ||| ||||||||||||||| ||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
42853302 |
attaaggaagatttaaatccctcccaatagtgaaaagaaaattaacatgggatccagaaaaaaccttagagagagaatcttttaacaggccctcctccag |
42853203 |
T |
|
| Q |
100 |
gcgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctg-atgccgttgcattaagatcacaaagctggaagttaaaatgt |
194 |
Q |
| |
|
|| ||||||||||| ||| ||||||||||||||||||||| ||| ||| | || ||||||||||| ||| ||| || ||||||||| |||||||| |
|
|
| T |
42853202 |
gcattttgaaagatccttgatcctccttttctgcatttcactaactgg-tattgcatgccgttgcaataacatctcatagctggaaggtaaaatgt |
42853108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 42855238 - 42855207
Alignment:
| Q |
1 |
attaaggaagacttaaatccctcccaatagtg |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
42855238 |
attaaggaagacttaaatccctcccaatagtg |
42855207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 211
Target Start/End: Complemental strand, 27383 - 27218
Alignment:
| Q |
46 |
atgagatccagaaaaaaccatagtgagagaagcttttaacatgccctcctccaagcgttttgaaagattcttaatcctccttttctgcatttcattaatt |
145 |
Q |
| |
|
|||| |||||||||||||| ||| ||| | |||||||||||||||||||| |||||||| ||||| ||||||||||||||| || |||||| ||||| |
|
|
| T |
27383 |
atgatatccagaaaaaaccttagaaggagcattttttaacatgccctcctccaggcgttttgcaagatccttaatcctccttttttgaatttcactaatt |
27284 |
T |
|
| Q |
146 |
ggctgctgatgccgttgcattaagatcacaaagctggaagttaaaatgtaaaatatctattattgc |
211 |
Q |
| |
|
||||||||||||||| | | ||| || || ||||| || ||||||||||||||| |||||||| |
|
|
| T |
27283 |
ggctgctgatgccgtcgaaataacgtctcacagctgcaatgtaaaatgtaaaatattaattattgc |
27218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University