View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20033_low_3 (Length: 584)
Name: NF20033_low_3
Description: NF20033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20033_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 30 - 409
Target Start/End: Complemental strand, 41444332 - 41443952
Alignment:
| Q |
30 |
gacataaatcttaaaccccaagaactaaacccaaatcacaatctaacccagattccaaaacctttgcaaaaaacacaaatttacaaactttatgctgttg |
129 |
Q |
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| T |
41444332 |
gacataaatcttaaaccccaagaactaaacccaaatcacaatctaacccagattccaaaacctttgcaaaaaacacaaatttacaaactttatgctgttg |
41444233 |
T |
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| Q |
130 |
aacatactttaaggacattttggttaaatgggtcaaaaagtttagcagaaaaaactcaaatctcaacaccataaagtgattg-agcaagcaaaaggtaaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41444232 |
aacatactttaaggacattttggttaaatgggtcaaaaagtttagcagaaaaaactcaaatctcaacaccataaagtgattgtagcaagcaaaaggtaaa |
41444133 |
T |
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| Q |
229 |
aaatgtgtgataaagcaaagtagatgaaaactcaccgatcagagaaaagcagagtagaagatgaaggaaatgggattggaaggtacaagcaagtgttggt |
328 |
Q |
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| T |
41444132 |
aaatgtgtgataaagcaaagtagatgaaaactcaccgatcagagaaaagcagagtagaagatgaaggaaatgggattggaaggtacaagcaagtgttggt |
41444033 |
T |
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| Q |
329 |
gcacatggaaattggaatggaaacaaagttgagaaattgaaaagcagagagagaaaacgagtgaaaaccaacgacatccaa |
409 |
Q |
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| T |
41444032 |
gcacatggaaattggaatggaaacaaagttgagaaattgaaaagcagagagagaaaacgagtgaaaaccaacgacatccaa |
41443952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 451 - 568
Target Start/End: Complemental strand, 41443910 - 41443792
Alignment:
| Q |
451 |
cttcatcaatattccacagctcataatatattttgttttcaagatttgaata-tttatttgttattctttctttnnnnnnntagtattttttattcttct |
549 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41443910 |
cttcatcaatattccacagctcataatatattttgttttcaagatttgaatattttatttgttattctttctttaaaaaaatagtattttttattcttct |
41443811 |
T |
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| Q |
550 |
tgagtttccacaactcact |
568 |
Q |
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||||||||||||||||||| |
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| T |
41443810 |
tgagtttccacaactcact |
41443792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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